View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12592_high_1 (Length: 326)

Name: NF12592_high_1
Description: NF12592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12592_high_1
NF12592_high_1
[»] chr4 (1 HSPs)
chr4 (18-313)||(40182872-40183167)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 40183167 - 40182872
Alignment:
Q  18 aatatgaccctgcccatggtgttgaaatatttccaactacacttccaacattaactatggttccacnnnnnnncagagccatgtgaggcacaacttgttg 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  40183167 aatatgaccctgcccatggtgttgaaatattcccaactacacttccaacattaactatggttccactttttttcagagccatgtgaggcacaacttgttg 40183068  T
Q  118 caccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattcggctaatggacccgtgctacctattccggcgtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40183067 caccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattcggctaatggacctgtgctacctattccggcgtta 40182968  T
Q  218 ttaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttgatcagatgaaacgtcaagttcgagtgtctct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40182967 ttaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttgatcagatgaaacgtcaagttcgagtgtctct 40182872  T

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