View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12592_high_2 (Length: 309)

Name: NF12592_high_2
Description: NF12592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12592_high_2
NF12592_high_2
[»] chr4 (1 HSPs)
chr4 (14-309)||(40182872-40183167)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 40182872 - 40183167
Alignment:
Q  14 agagacactcgaacttgacgtttcatctgatcaaagcgctacttcagccgtggacactattatatcaaaatacggacgtatcgacattctagttaataac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40182872 agagacactcgaacttgacgtttcatctgatcaaagcgctacttcagccgtggacactattatatcaaaatacggacgtatcgacattctagttaataac 40182971  T
Q  114 gccggaataggtagcacgggtccattagccgaattaccactagacactattagaaaaacattggaaattaacacgtcgggacaactaagaatggtgcaac 213  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40182972 gccggaataggtagcacaggtccattagccgaattaccactagacactattagaaaaacattggaaattaacacgttgggacaactaagaatggtgcaac 40183071  T
Q  214 aagttgtgcctcacatggctctgnnnnnnngtggaaccatagttaatgttggaagtgtagttggaaatatttcaacaccatgggcagggtcatatt 309  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40183072 aagttgtgcctcacatggctctgaaaaaaagtggaaccatagttaatgttggaagtgtagttgggaatatttcaacaccatgggcagggtcatatt 40183167  T

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