View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12592_low_1 (Length: 336)

Name: NF12592_low_1
Description: NF12592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12592_low_1
NF12592_low_1
[»] chr3 (1 HSPs)
chr3 (16-323)||(36745198-36745505)
[»] chr8 (11 HSPs)
chr8 (198-303)||(6274156-6274261)
chr8 (198-303)||(6288406-6288511)
chr8 (198-303)||(6331535-6331640)
chr8 (198-303)||(6351894-6351999)
chr8 (198-297)||(6390630-6390729)
chr8 (198-288)||(7458732-7458822)
chr8 (198-303)||(6321028-6321133)
chr8 (198-297)||(6409835-6409934)
chr8 (198-300)||(6362830-6362932)
chr8 (198-288)||(7471134-7471224)
chr8 (177-306)||(6450452-6450581)
[»] chr1 (1 HSPs)
chr1 (200-303)||(36925655-36925758)
[»] chr5 (2 HSPs)
chr5 (177-306)||(9605567-9605696)
chr5 (107-179)||(9605326-9605398)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 36745198 - 36745505
Alignment:
Q  16 catcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745198 catcgaactaagtttgccacacccagatggcgaaaaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttgg 36745297  T
Q  116 caattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggttgaatacccattgcgtgattgagccattcatcatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36745298 caattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggttgaatacacattgcgtgattgagccattcatcatag 36745397  T
Q  216 ctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcatt 315  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745398 ctacaaataggtgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcatt 36745497  T
Q  316 gatcagtg 323  Q
    ||||||||    
T  36745498 gatcagtg 36745505  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 6274261 - 6274156
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6274261 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6274162  T
Q  298 acttgc 303  Q
    ||||||    
T  6274161 acttgc 6274156  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 6288511 - 6288406
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6288511 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6288412  T
Q  298 acttgc 303  Q
    ||||||    
T  6288411 acttgc 6288406  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 6331640 - 6331535
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| |||||||| || |||||||  || || ||||||||||||||||| || |||||    
T  6331640 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcacaaacttctacttccacattatcgtgacacaatgaacattaatgc 6331541  T
Q  298 acttgc 303  Q
    ||||||    
T  6331540 acttgc 6331535  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 6351999 - 6351894
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| ||||| ||   ||| ||||||||||| ||||||||||| ||| |||  |||||||| |||||||||||||| || |||||    
T  6351999 ttgagccattcatcatagcaacaaacaggcatcttagtgtggttcaccctattcataaacttttacttcctcactaccgtgacacaatgaacataaatgc 6351900  T
Q  298 acttgc 303  Q
    ||||||    
T  6351899 acttgc 6351894  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 6390729 - 6390630
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||||||| |||||||||| || |||||    
T  6390729 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactatcgtaacacaatgaacataaatgc 6390630  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 7458822 - 7458732
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 288  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||| ||||||||||||||    
T  7458822 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactaccgtgacacaatgaa 7458732  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 6321133 - 6321028
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| || |||||   ||| ||||||||||| |||||||| || ||||| |  || || ||||||||||||||||| || |||||    
T  6321133 ttgagccattcatcatagcaactaataggcatcttagtgtggttcaccctattcacaaacttctgcttccacattatcgtgacacaatgaacattaatgc 6321034  T
Q  298 acttgc 303  Q
    ||||||    
T  6321033 acttgc 6321028  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 6409934 - 6409835
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||  |||  || ||||||||| |||||||||| || |||||    
T  6409934 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaactattacttccacactatcgtaacacaatgaacataaatgc 6409835  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 6362932 - 6362830
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 297  Q
    ||||||||||| ||||||| ||||||||   ||| ||||||||||| ||||||||||| ||||| |  || || ||||||||||| ||||| || |||||    
T  6362932 ttgagccattcgtcatagcaacaaataggcatctaagtgtggttcaccctattcataaacttctgcttccacattatcgtgacacgatgaacataaatgc 6362833  T
Q  298 act 300  Q
    |||    
T  6362832 act 6362830  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 7471224 - 7471134
Alignment:
Q  198 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 288  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| | ||||||||| ||| |||  || |||||  |||||||||||||    
T  7471224 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccatattcataaacttttacttccacactactgtgacacaatgaa 7471134  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 6450581 - 6450452
Alignment:
Q  177 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 276  Q
    |||||||||| |||   ||||| || |||||||||||||| |||||||||  ||| |||||  |||| || ||| |||||||| ||   || || || ||    
T  6450581 ggttgaatactcatgcagtgatggaaccattcatcatagcaacaaatagacatctaagtgtacttcacccgattaataagcttttattcccccattaccg 6450482  T
Q  277 tgacacaatgaatatcaatgcacttgctcg 306  Q
    ||||||||| |||||||||| |||||||||    
T  6450481 tgacacaataaatatcaatggacttgctcg 6450452  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 36925655 - 36925758
Alignment:
Q  200 gagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcac 299  Q
    |||||||||||||||||| |||||||  |||| |||||  |||| ||||||||||||||  |||| ||||||| ||||||||| |||||||| |||| ||    
T  36925655 gagccattcatcatagcttcaaataggcgtcttagtgtacttcaccctattcataagctattacatcctcactttcgtgacaccatgaatataaatggac 36925754  T
Q  300 ttgc 303  Q
    ||||    
T  36925755 ttgc 36925758  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 306
Target Start/End: Original strand, 9605567 - 9605696
Alignment:
Q  177 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 276  Q
    |||||||||| |||   ||| ||||||||||||||||||| ||||| |||  ||| |||||  |||| |||||| ||||| | ||| | || || |  ||    
T  9605567 ggttgaatactcatgcagtggttgagccattcatcatagcaacaaacagacatcttagtgttcttcaccctattaataagttgctagatccccatttccg 9605666  T
Q  277 tgacacaatgaatatcaatgcacttgctcg 306  Q
    ||||||||| |||||||| | |||||||||    
T  9605667 tgacacaataaatatcaacggacttgctcg 9605696  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 9605326 - 9605398
Alignment:
Q  107 acaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggt 179  Q
    |||||||||| ||||||||||||  ||||| ||||||||||  | ||||  || ||||||||||| |||||||    
T  9605326 acaatttggctattggccaaggctcatgtaattgtaaatgattcatgctaccatcaactcatgagccactggt 9605398  T

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