View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12592_low_2 (Length: 326)

Name: NF12592_low_2
Description: NF12592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12592_low_2
NF12592_low_2
[»] chr4 (1 HSPs)
chr4 (18-313)||(40182872-40183167)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 40183167 - 40182872
Alignment:
Q  18 aatatgaccctgcccatggtgttgaaatatttccaactacacttccaacattaactatggttccacnnnnnnncagagccatgtgaggcacaacttgttg 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  40183167 aatatgaccctgcccatggtgttgaaatattcccaactacacttccaacattaactatggttccactttttttcagagccatgtgaggcacaacttgttg 40183068  T
Q  118 caccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattcggctaatggacccgtgctacctattccggcgtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40183067 caccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattcggctaatggacctgtgctacctattccggcgtta 40182968  T
Q  218 ttaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttgatcagatgaaacgtcaagttcgagtgtctct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40182967 ttaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttgatcagatgaaacgtcaagttcgagtgtctct 40182872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University