View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12592_low_3 (Length: 310)
Name: NF12592_low_3
Description: NF12592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12592_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 29662104 - 29662382
Alignment:
| Q |
16 |
acaatccaatcccaaaaacctttctcttgcttgctactgccaccacctgtagtaccctttgcacctgtagctgcaaagactcttcctgttgttggaacca |
115 |
Q |
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| T |
29662104 |
acaatccaatcccaaaaacctttctcttgcttgctactgccaccacctgtagtaccctttgcacctgtagctgcaaagactcttcccgttgttggaacca |
29662203 |
T |
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| Q |
116 |
ttggcaacatggtgatagaagccattaattctcctagcttaatttgaaaaattatatcaactag-aaactaaaatataatataaattctctttgcctagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29662204 |
ttggcaacatggtgatagaagccattaattctcctagcttaatttgaaaaattatatcaactagaaaactaaaatataatataaattctctttgcctagt |
29662303 |
T |
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| Q |
215 |
gttattgatgatatatatatttgttttgtggctatttttgtgtagtaaatgtgaggagttggattgagtttgtatgatg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662304 |
gttattgatgatatatatatttgttttgtggctatttttgtgtagtaaatgtgaggagttggattgagtttgtatgatg |
29662382 |
T |
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