View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12593_high_4 (Length: 328)

Name: NF12593_high_4
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12593_high_4
NF12593_high_4
[»] chr8 (1 HSPs)
chr8 (15-308)||(37973983-37974267)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 37974267 - 37973983
Alignment:
Q  15 cacagaacaatgcttttgtagtttgttgtgttatgttatgttatgaatgaataccatatttattattatatactagcacgttatatgctgctgcatatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||||||   ||||||    
T  37974267 cacagaacaatgcttttgtagtttgttgtgttatgttatg-----aatgaataccatatt-attattatatactagcacgttatatgctgc---atatat 37974177  T
Q  115 nnnnnnnnnnnngtaagcattatatatatat--ttaggaataaattacaggttgagtatttgcatttgttggatacggtgaactttgttgggcacatggg 212  Q
                |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37974176 aaaaataaaa--gtaagcattatatatatatatttaggaataaattacaggttgagtatttgcatttgttggatacggtgaactttgttgggcacatggg 37974079  T
Q  213 tctccatgtgacccaaagatgccttgttattggggagcaaagaaataatgatgttctgtttgatgggtcacaactcaatactactcactataggtt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37974078 tctccatgtgacccaaagatgccttgttattggggagcaaagaaataatgatgttctgtttgatgggtcacaactcaatactactcactataggtt 37973983  T

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