View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12593_low_1 (Length: 880)
Name: NF12593_low_1
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12593_low_1 |
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| [»] scaffold0189 (2 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 18 - 686
Target Start/End: Complemental strand, 31306 - 30636
Alignment:
| Q |
18 |
accataaacaattgtgaattttataggactaaaaacatatgtaaccctaaaacgtacaaaatcagtaacaaacaagacagaaacaggt--aaataaatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| |
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| T |
31306 |
accataaacaattgtgaattttataggactaaaaacatatgtaaccctaaaacgtaaaaaatcagtaacaaacaagaaagaaacaggtgtaaataaatca |
31207 |
T |
|
| Q |
116 |
ttattatagctaaccttctcagcacccttgatcaggaagtagcctccatggtcaaattcacagtcacctttttcagcttcactcatccagcaaagatcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31206 |
ttattatagctaaccttctcagcacccttgatcaggaagtagcctccatggtcaaattcacagtcacctttttcagcttcactcatccagcaaagatcag |
31107 |
T |
|
| Q |
216 |
acttgaccataacaggcagtctaccaatagttatttcccttgtctcatccaacttgatctctctatctatatactcttctttcccagtcttaaacttatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31106 |
acttgaccataacaggcagtctaccaatagttatttcccttgtctcatccaacttgatctctctatcaatatactcttctttcccagtcttaaacttatc |
31007 |
T |
|
| Q |
316 |
actccgaaccttctttggaacatatacctgaaattaacacacacagaacatcaacatccaaacactctacatg-ttatttctatctctcttacttttcat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
31006 |
actccgaaccttctttggaacatatacctgaaattaacacacacagaacatcaacatccaaacactctacgtgtttatttctatctctcttacttttcat |
30907 |
T |
|
| Q |
415 |
cttctacaactcacccacaaaaaccaaaggacaccgtagtaattttaatgtcaaaaatcatttcttgttaacacataaccatcaaacaggaaccacaaat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
30906 |
cttctacaactcacccacaaaaaccaaaggacaccgtagtgattttaatgtcaaaaatcatttcttgttaacacataaccatcaaa-aggaaacacaaat |
30808 |
T |
|
| Q |
515 |
ttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacctgtaattaacacacatgcagttgtgttatttgaactataaaatacaaacacca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30807 |
ttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacctgtaattaacacacatgcagttgtgttatttgaactataaaatacaaacacca |
30708 |
T |
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| Q |
615 |
cctatgtgtttatttccagctctactactatttacacacaaaaaccaaaagacacccaagtaattttcaagt |
686 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30707 |
cctatgtgtttatttccagctctactactatttaaacacaaaaaccaaaagacacccaagtaattttcaagt |
30636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 772 - 869
Target Start/End: Complemental strand, 30550 - 30453
Alignment:
| Q |
772 |
tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcatctc |
869 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30550 |
tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcatctc |
30453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 45 - 652
Target Start/End: Original strand, 48882371 - 48882986
Alignment:
| Q |
45 |
actaaaaacatatgtaaccctaaaacgtacaaaatcagtaacaaacaagacagaaacaggt--aaataaatcattattatagctaaccttctcagcaccc |
142 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||| ||||||||||| ||||||||| |
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| T |
48882371 |
actaaaaacatatgtaaccctaaaacgtacaaaatcggtaacaaacaagacagaaacacgtgtaaataaatcataattgtagctaaccttttcagcaccc |
48882470 |
T |
|
| Q |
143 |
ttgatcaggaagtagcctccatggtcaaattcacagtcacctttttcagcttcactcatccagcaaagatcagacttgaccataacaggcagtctaccaa |
242 |
Q |
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|| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
48882471 |
ttaatcagaaagtagcctccgtggtcaaattcacaatcacctttctcagcttcactcatccaacacagatcagacttgaccataacaggcagtctcccaa |
48882570 |
T |
|
| Q |
243 |
tagttatttcccttgtctcatccaacttgatctctctatctatatactcttctttcccagtcttaaacttatcactccgaaccttctttggaacatatac |
342 |
Q |
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||||||||||||| || || ||| | || || ||| |||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48882571 |
tagttatttccctcgtatcctcccatttaatatctttatcaatgtattcttctttcccagtcttaaacttatcactccgaaccttcttcataacatatac |
48882670 |
T |
|
| Q |
343 |
ctgaaattaacacacaca------------gaacatcaacatccaaacactctacatgttatttctatctctcttac-ttttcatcttctacaactcacc |
429 |
Q |
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|||||||||||||||||| ||||||||| || |||||||| | | |||| ||||| |||| ||| |||| |||||||| ||| |
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| T |
48882671 |
ctgaaattaacacacacagttctgttatctgaacatcaaaatacaaacactatgtgt-ttatctctatatctcatactttttaatcttcta-----caca |
48882764 |
T |
|
| Q |
430 |
cacaaaaaccaaaggacaccgtagtaattttaatgtcaaaaatcatttcttgttaacacataaccatcaaacaggaaccacaaatttcaaatcatactaa |
529 |
Q |
| |
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|||||||| |||||||| | || |||||| ||||||||||||||||||||||| ||| |||||||||| |||||| | ||||||||||||||||||| |
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| T |
48882765 |
cacaaaaatcaaaggacgc--taacaattttgatgtcaaaaatcatttcttgtta--acaaaaccatcaaataggaactaaaaatttcaaatcatactaa |
48882860 |
T |
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| Q |
530 |
cccacttttcaaaatgaacatcaaaatacacc-tgtaatta--acacacatgcag-ttgtgttatttgaactataaaatacaaacaccacctatgtgttt |
625 |
Q |
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||||| ||||||||||||||| |||||||||| |||||||| |||||||||||| ||| ||||||||||| |||| |||| ||| |||||||||| |
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| T |
48882861 |
cccacatttcaaaatgaacattaaaatacaccttgtaattaacacacacatgcagtttgcgttatttgaacaccaaaaaacaagcacacactatgtgttt |
48882960 |
T |
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| Q |
626 |
atttccagctctactactatttacaca |
652 |
Q |
| |
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|||| |||||| |||||||||||||| |
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| T |
48882961 |
attt-tagctcttctactatttacaca |
48882986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 105 - 360
Target Start/End: Original strand, 53013821 - 53014076
Alignment:
| Q |
105 |
taaataaatcattattatagctaaccttctcagcacccttgatcaggaagtagcctccatggtcaaattcacagtcacctttttcagcttcactcatcca |
204 |
Q |
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|||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
53013821 |
taaagaaatcataattatagataaccttctcagcacccttgatcagaaagtagcctccatggtcaaattcacaatcacctttttcaacatcactcatcca |
53013920 |
T |
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| Q |
205 |
gcaaagatcagacttgaccataacaggcagtctaccaatagttatttcccttgtctcatccaacttgatctctctatctatatactcttctttcccagtc |
304 |
Q |
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||| ||||| ||||||||||||||||||||||| |||| ||||||||| || |||| |||| | ||||||||||| |||||||| ||||| || ||| |
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| T |
53013921 |
gcagagatctgacttgaccataacaggcagtctcccaaaagttatttctctcttctcctccatgattatctctctatcaatatactcctcttttcctgtc |
53014020 |
T |
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| Q |
305 |
ttaaacttatcactccgaaccttctttggaacatatacctgaaattaacacacaca |
360 |
Q |
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||||| ||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
53014021 |
ttaaatttatcactctgaaccttcttcggagtatatacctgaaattaacacacaca |
53014076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 796 - 865
Target Start/End: Original strand, 48883162 - 48883231
Alignment:
| Q |
796 |
tgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttca |
865 |
Q |
| |
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|||||||||||||| | || |||||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
48883162 |
tgaacatcaactttcatcttagaagcataagtcatcctctgcaacctggcatgtctgggaagcatcttca |
48883231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 785 - 836
Target Start/End: Original strand, 53014493 - 53014544
Alignment:
| Q |
785 |
taacctgaagttgaacatcaactttaactttggaagcataagtcatcctctg |
836 |
Q |
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||||||||| ||||||||||| ||| | |||||||||||| ||||||||||| |
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| T |
53014493 |
taacctgaacttgaacatcaattttgattttggaagcataggtcatcctctg |
53014544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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