View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12593_low_10 (Length: 299)
Name: NF12593_low_10
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12593_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 50227296 - 50227560
Alignment:
| Q |
15 |
cttaaaagacatgtctacaattatgcagtacaatcagcaaactcaagcttaatcgttgtatttgtataaatttctaacttcattgaaacaaataaaagtg |
114 |
Q |
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| T |
50227296 |
cttaaaaggcatgtctacaattatgcagtacaatcagcaaactcaaggttaatcgttgt------ataaatttctaacttcattgaaacaaataaaagtg |
50227389 |
T |
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| Q |
115 |
aaagaagaaactttatccataagaaccatatgctcccctttcgttacacttagtttggctctatagcagcaccacttattaagcttcacatgtgatagtg |
214 |
Q |
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| T |
50227390 |
aaagaagaaactttacccataagaaccatatgctcccctttcgttacacttagtttggctctatagcagcaccacttattaagcttcacatgtgatagtg |
50227489 |
T |
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| Q |
215 |
atactgcagatttgaagattagatctttgaaatcatctgcctgcaagcagacaacctccatcgtgcattct |
285 |
Q |
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| T |
50227490 |
atactgcatatttgaagattagatctttgaaatcatctgcctgcaagcagacaacctccatcgtgcattct |
50227560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 40979786 - 40979900
Alignment:
| Q |
170 |
tggctctatagcagcaccacttattaagcttcacatgtgatagtgatactgcagatttgaagattagatctttgaaatcatctgcctgcaagcagacaac |
269 |
Q |
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| T |
40979786 |
tggctctacagcagcaccacttactaagctccacatgtgatagtgatactgcagatttgaagaatagatcgttgaaatcatctgcctgcaaccgaacagc |
40979885 |
T |
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| Q |
270 |
ctccatcgtgcattc |
284 |
Q |
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| T |
40979886 |
ctccatcgtgcattc |
40979900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 19535157 - 19535225
Alignment:
| Q |
170 |
tggctctatagcagcaccacttattaagcttcacatgtgatagtgatactgcagatttgaagattagat |
238 |
Q |
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| T |
19535157 |
tggctctatagcagcaccactcactaagctcaacatgtgatagtgatgctgcagatttgaagattagat |
19535225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 29704205 - 29704267
Alignment:
| Q |
12 |
gaacttaaaagacatgtctacaattatgcagtacaatcagcaaactcaagcttaatcgttgtat |
75 |
Q |
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| T |
29704205 |
gaacttagaaggcatgtctacaattatctagtacaatta-caaactcaagcttaatcgctgtat |
29704267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 29199266 - 29199224
Alignment:
| Q |
99 |
gaaacaaataaaagtgaaagaagaaactttatccataagaacc |
141 |
Q |
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| T |
29199266 |
gaaacaaataaaagtggaagaagaaactttatccataagaacc |
29199224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 19768920 - 19768878
Alignment:
| Q |
99 |
gaaacaaataaaagtgaaagaagaaactttatccataagaacc |
141 |
Q |
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| T |
19768920 |
gaaacaaataaaagtggaagaagaaaatttacccataagaacc |
19768878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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