View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12593_low_11 (Length: 248)
Name: NF12593_low_11
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12593_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13071288 - 13071503
Alignment:
| Q |
1 |
attttgctttatatgtttttcaaaatccaaaggttaaaatgtttaagaacaattacgattgatgattttagatttttggttcgatttcagtccagaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13071288 |
attttgctttatatgtttttcaaaatccaagggttaaaatgttttagaacaattacgattgatgattttagatttttggttcaatttcagtccagaacac |
13071387 |
T |
|
| Q |
101 |
ctggaatcttcatatatacgaagcagtggttcttaaagtctacgattgtcgtggttcagttttttgaccaggatttataactcattttcatcataagaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13071388 |
ctggaatcttcatatatacgaagcagtggttcttaaagtctacgattgtggtggttcagtttttttaccaggatttataactcattttcatcataagaat |
13071487 |
T |
|
| Q |
201 |
gttgatgttgcatctg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13071488 |
gttgatgttgcatctg |
13071503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13080950 - 13081178
Alignment:
| Q |
1 |
attttgctttatatgtttttcaaaatccaaaggttaaaatgtttaagaacaattacgattgatgattttagatttttggttcgatttcagtccagaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||||| ||| ||||| ||||||||||||| || ||| |
|
|
| T |
13080950 |
attttgctttatatgtttttcaaaatccaagggttaaactgttcaagagcaattactattgatgattttggatatttggctcgatttcagtcccgatcac |
13081049 |
T |
|
| Q |
101 |
ctggaatcttcatatatacgaagcagtggttcttaaagtctac---gattgtcgtggttcagttttttgaccaggatttataactcattttcatcataag |
197 |
Q |
| |
|
|| ||| |||| | || ||||||||||||||| |||||||| || |||| ||| |||||||| ||| ||| | | |||| | ||||||||| | |
|
|
| T |
13081050 |
ctataatattcaactctatgaagcagtggttcttgaagtctacaatcataatcgttcttctgttttttgtccatgatgtgttactcgtattcatcatacg |
13081149 |
T |
|
| Q |
198 |
aatgttgatgttgcatctggtttagttttc |
227 |
Q |
| |
|
||| ||||| ||||||||||||| |||||| |
|
|
| T |
13081150 |
aatcttgat-ttgcatctggttttgttttc |
13081178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University