View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12593_low_12 (Length: 202)
Name: NF12593_low_12
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12593_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 21647568 - 21647737
Alignment:
| Q |
16 |
caaaatgaaccttggaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21647568 |
caaaatgaaccttggaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttg |
21647667 |
T |
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| Q |
116 |
tcgtgccagaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgca |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21647668 |
tcgtgccagaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgca |
21647737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 22770039 - 22770197
Alignment:
| Q |
23 |
aaccttggaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgcc |
122 |
Q |
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| T |
22770039 |
aacctttgaatctatttccttatcgaccggctccccgttcggcttgaataaagggcaattgtctctaactttatgaagcggaattgaaagctgtcgtgcc |
22770138 |
T |
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| Q |
123 |
agaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggc |
181 |
Q |
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| T |
22770139 |
aaaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggc |
22770197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 39171227 - 39171106
Alignment:
| Q |
54 |
tccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccgctaaagggttagcatgaattccag |
153 |
Q |
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| T |
39171227 |
tccccactcgacttgtataaagggcaattaactctgactttatgaagtggaatagaaagttgtcgtgccagaaccgctaaa-ggtttgcatgaattccag |
39171129 |
T |
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| Q |
154 |
taattacgctcccaccaagatct |
176 |
Q |
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| T |
39171128 |
taattactctcccaccaagatct |
39171106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 39175128 - 39175009
Alignment:
| Q |
54 |
tccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccgctaaagggttagcatgaattccag |
153 |
Q |
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|||||| ||| |||| |||||| ||||| | ||| ||| ||||||| ||||| | ||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
39175128 |
tccccactcgacttgtataaagagcaattaactctgactttatgaagtggaatacaaagttgtcgtgcca--accgctaaagg-ttagcatgaattccag |
39175032 |
T |
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| Q |
154 |
taattacgctcccaccaagatct |
176 |
Q |
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||||||| ||||||||||||||| |
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| T |
39175031 |
taattactctcccaccaagatct |
39175009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 39175290 - 39175417
Alignment:
| Q |
30 |
gaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccg |
129 |
Q |
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|||||||||| |||||||| || ||||||||| ||||| |||| | | ||| | ||| ||| ||||||| ||||| || |||||| ||||||| || | |
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| T |
39175290 |
gaatctatttatttatcaactggttccccattcagcttgtataacgagaaattaattctgactttatgaagtggaatagaaagttgttgtgccagtactg |
39175389 |
T |
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| Q |
130 |
ctaaagggttagcatgaattccagtaat |
157 |
Q |
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||| | ||| |||||||||||||||||| |
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| T |
39175390 |
ctacatggtaagcatgaattccagtaat |
39175417 |
T |
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