View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12593_low_2 (Length: 475)

Name: NF12593_low_2
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12593_low_2
NF12593_low_2
[»] chr1 (7 HSPs)
chr1 (1-394)||(24603945-24604338)
chr1 (391-458)||(24603848-24603915)
chr1 (191-345)||(17340877-17341031)
chr1 (184-338)||(16930112-16930261)
chr1 (184-261)||(17409117-17409194)
chr1 (281-341)||(3075909-3075969)
chr1 (290-338)||(8778923-8778971)
[»] chr8 (1 HSPs)
chr8 (178-347)||(39505360-39505530)
[»] chr4 (6 HSPs)
chr4 (178-341)||(31363173-31363335)
chr4 (186-325)||(15174401-15174539)
chr4 (184-262)||(34250896-34250974)
chr4 (197-345)||(28904118-28904267)
chr4 (184-262)||(4383223-4383301)
chr4 (58-99)||(34934936-34934977)
[»] chr2 (2 HSPs)
chr2 (191-338)||(37513183-37513329)
chr2 (178-269)||(33608861-33608952)
[»] chr7 (3 HSPs)
chr7 (182-338)||(26021788-26021940)
chr7 (175-221)||(5942683-5942729)
chr7 (281-338)||(5942748-5942805)
[»] chr6 (3 HSPs)
chr6 (245-326)||(28739597-28739678)
chr6 (184-261)||(30872597-30872674)
chr6 (176-259)||(5649516-5649598)
[»] chr3 (1 HSPs)
chr3 (198-325)||(15301063-15301192)
[»] chr5 (1 HSPs)
chr5 (178-262)||(6777257-6777341)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 24604338 - 24603945
Alignment:
Q  1 atagtataaacatttaagctgtttggtcagtattgaattacggtggggagccatggacgtgtgttttgctaatgctataaatagtagcttcttgtttttc 100  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24604338 atagtagaaacatttaagctgtttggtcagttttgaatcacggtggggagccatggacgtgtgttttgctaatgctataaatagtagcttcttgtttttc 24604239  T
Q  101 catggtacacgcagtgttttcatttctttagaattttcaattatctcattcaaataacactttaaaggtgttggtttagtgcttgtttgaagtggcgttt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24604238 catggtacatgcagtgttttcatttctttagaattttcaattatctcattcaaataacactttaaaggtgttgctttagtgcttgtttgaagtggcgttt 24604139  T
Q  201 gatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgttaaagtggttttttaccat 300  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  24604138 gatgaagcaaaagcacatctgcacattttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgacgttaaagtgattttttaccat 24604039  T
Q  301 gattttaagtaaaacgtgatttgcagacgtccatccaatcatgcagttagtggaacataagtgatcttgtatctgacatgttaagggtatgtgg 394  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24604038 gattttaagcaaaacgtgatttgcagacgtccatccaaacatgcagttagtggaacataagtgatcttgtatctgacatgttaaggatatgtgg 24603945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 24603915 - 24603848
Alignment:
Q  391 gtggaagttgaatcaatgagcaaatgtaacccataaggagatgagtaaaggaatatgtcgtgaaatgg 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24603915 gtggaagttgaatcaatgagcaaatgtaacccataaggagatgagtaaaggaatatgtcgtgaaatgg 24603848  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 345
Target Start/End: Original strand, 17340877 - 17341031
Alignment:
Q  191 agtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgtt-aaagtgg 289  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||| ||||||| |||||| |||||    |||| | ||| ||||| |    
T  17340877 agtggcgtttgatgaagcaaaaacacatctacacactttacgatgtaaatctgccgtaattttaaaaagctgaaaattataacttccacgttaaaagtag 17340976  T
Q  290 ttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaatcatgca 345  Q
      ||||||| |||||||||  ||||||||||||| |||||| ||||||| ||||||    
T  17340977 -attttaccgtgattttaaacaaaacgtgatttgaagacgttcatccaaacatgca 17341031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 338
Target Start/End: Original strand, 16930112 - 16930261
Alignment:
Q  184 tgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgtta 283  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||    ||| |||||||| ||||||||||||||||||  |||||  ||||| |  |||    
T  16930112 tgtttggagtggcgtttgatgaagtaaaagcacatcagcacact----gatgtaaatctgccgtgattttaagaagctgagaattgtagcttctacatta 16930207  T
Q  284 aagtggttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaa 338  Q
    ||||||  |||| || ||||||  || ||||||||| |||||| || ||||||||    
T  16930208 aagtgg-attttgccgtgatttctagcaaaacgtgacttgcagccgcccatccaa 16930261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 17409117 - 17409194
Alignment:
Q  184 tgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagct 261  Q
    ||||||||||||||||||||||||||||| || ||||||| ||| |  | | |||||||  |||||||||||||||||    
T  17409117 tgtttgaagtggcgtttgatgaagcaaaatcatatctgcaaactatttggtgtaaatctcccgtgattttaagaagct 17409194  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 3075909 - 3075969
Alignment:
Q  281 ttaaagtggttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaatca 341  Q
    |||||||  ||||||| | ||||||||||||||||||||||||||| ||  ||||||||||    
T  3075909 ttaaagtaattttttatcgtgattttaagtaaaacgtgatttgcagccgctcatccaatca 3075969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 8778971 - 8778923
Alignment:
Q  290 ttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaa 338  Q
    |||||| ||||||||||||| |||||||||||||||  || ||||||||    
T  8778971 ttttttgccatgattttaagcaaaacgtgatttgcaaccgcccatccaa 8778923  T

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Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 347
Target Start/End: Complemental strand, 39505530 - 39505360
Alignment:
Q  178 agtgcttgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcg 277  Q
    ||||| |||||| |||||| |||||||||| |||| || || |||||| ||| |||||||| |||||||||||||||||||||||  |||||| |||||     
T  39505530 agtgcatgtttggagtggcatttgatgaagtaaaaacaaatgtgcacatttttcgatataagtctgtcgtgattttaagaagctgagaattgaagcttcc 39505431  T
Q  278 atgttaaagtggtt-ttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaatcatgcagt 347  Q
    |||||||||||||| ||||||| |||||||||| ||||  | ||||||||  | |||||||| ||||||||    
T  39505430 atgttaaagtggtttttttaccgtgattttaagcaaaaaataatttgcagctgcccatccaaacatgcagt 39505360  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 341
Target Start/End: Complemental strand, 31363335 - 31363173
Alignment:
Q  178 agtgcttgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcg 277  Q
    ||||| |||||||||||| |||||||||||||||| ||||| ||||| || | | || |||||||| ||| |||||||||||| ||| ||||| ||||      
T  31363335 agtgcctgtttgaagtggtgtttgatgaagcaaaatcacatatgcacgctattcaatgtaaatctgccgtaattttaagaagc-ggatattgaagcttat 31363237  T
Q  278 atgttaaagtggttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaatca 341  Q
     |||||||||| |||||| || | |||||||| ||||||| |||| ||| || |||||||||||    
T  31363236 gtgttaaagtgattttttgccgtaattttaagcaaaacgtaatttacagccgcccatccaatca 31363173  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 15174539 - 15174401
Alignment:
Q  186 tttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgttaaa 285  Q
    |||| |||||||||| |||| ||||||||||||||||||||| | |||||||||| || ||| |||| ||||  |||  |||||| ||||| | ||||||    
T  15174539 tttggagtggcgtttaatgatgcaaaagcacatctgcacactattcgatataaatttgccgttatttgaagagactgcgaattgaagcttctacgttaaa 15174440  T
Q  286 gtggttttttaccatgattttaagtaaaacgtgatttgca 325  Q
    ||| ||||||  |||||||||||| ||| ||| |||||||    
T  15174439 gtgatttttt-gcatgattttaagcaaaccgtaatttgca 15174401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 34250974 - 34250896
Alignment:
Q  184 tgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctg 262  Q
    |||||| |||||||||||||||| ||||| ||||||| || ||| | |||| |||||||||||| ||||||||||||||    
T  34250974 tgtttggagtggcgtttgatgaaacaaaatcacatctacatactattcgatgtaaatctgtcgtaattttaagaagctg 34250896  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 28904118 - 28904267
Alignment:
Q  197 gtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgttaaagtgg-tttttt 295  Q
    |||||||| | ||||| |||||||||||||| | | || ||| |||| ||||||||||||||||||  |||||  |||||    ||||||||| ||||||    
T  28904118 gtttgatggatcaaaatcacatctgcacactattcaatgtaagtctgccgtgattttaagaagctgagaattggagcttctgcattaaagtggttttttt 28904217  T
Q  296 accatgattttaagtaaaacgtgatttgcagacgtccatccaatcatgca 345  Q
     || | |||| ||| |||| ||||||||||||||||| ||||| ||||||    
T  28904218 gccgtaatttcaagcaaaatgtgatttgcagacgtccttccaaacatgca 28904267  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 4383223 - 4383301
Alignment:
Q  184 tgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctg 262  Q
    |||||| ||||||||||||| |||||||  |||||||| |||||||   || ||||| ||  |||||||||||||||||    
T  4383223 tgtttggagtggcgtttgataaagcaaagacacatctgaacactttttaatgtaaatttgctgtgattttaagaagctg 4383301  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 34934936 - 34934977
Alignment:
Q  58 cgtgtgttttgctaatgctataaatagtagcttcttgttttt 99  Q
    |||| ||||| ||||||||||||||||||| |||||||||||    
T  34934936 cgtgcgtttttctaatgctataaatagtagtttcttgttttt 34934977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 37513329 - 37513183
Alignment:
Q  191 agtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgttaaagtggt 290  Q
    |||||||||||||||||||||||||||||| || |  || |||| |||||||| ||||||||||||||| ||  ||||||  |||| | |||||||||||    
T  37513329 agtggcgtttgatgaagcaaaagcacatctacatatgtttcgatgtaaatctgccgtgattttaagaagttgagaattgaaacttctacgttaaagtggt 37513230  T
Q  291 tttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaa 338  Q
    |||||    |||||||||| ||||  |||||||||| |||||||||||    
T  37513229 tttttgtt-tgattttaagcaaaatatgatttgcagccgtccatccaa 37513183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 33608952 - 33608861
Alignment:
Q  178 agtgcttgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattg 269  Q
    |||||||||||||||||| |||||||||||||||| | ||| ||  |  | | |||| ||||||| |  |||||||||||||||| ||||||    
T  33608952 agtgcttgtttgaagtggtgtttgatgaagcaaaaacgcatttgtcctgtattcgatgtaaatctataatgattttaagaagctgaaaattg 33608861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 338
Target Start/End: Original strand, 26021788 - 26021940
Alignment:
Q  182 cttgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgt 281  Q
    |||||||| ||||| ||||||||||  |||| ||||| || ||||||  |||| |||||||| | ||||||||||||||||  |||||  |||||    |    
T  26021788 cttgtttggagtggtgtttgatgaattaaaaacacatttgtacactt--cgatgtaaatctg-catgattttaagaagctgataattgtagcttctgctt 26021884  T
Q  282 taaagtggttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaa 338  Q
    |||||||||||||| || |||||| ||| ||| ||||||||| || |||||||||||    
T  26021885 taaagtggttttttgccgtgatttcaagcaaa-cgtgatttgtagccgtccatccaa 26021940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 5942683 - 5942729
Alignment:
Q  175 tttagtgcttgtttgaagtggcgtttgatgaagcaaaagcacatctg 221  Q
    ||||||||||||||| ||||| |||||| |||||||||||| |||||    
T  5942683 tttagtgcttgtttggagtggtgtttgacgaagcaaaagcatatctg 5942729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 5942748 - 5942805
Alignment:
Q  281 ttaaagtggttttttaccatgattttaagtaaaacgtgatttgcagacgtccatccaa 338  Q
    ||||||||||||||| |  | |||||||| |||||||||||||||| || ||||||||    
T  5942748 ttaaagtggttttttgctctaattttaagcaaaacgtgatttgcagccgcccatccaa 5942805  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 28739678 - 28739597
Alignment:
Q  245 cgtgattttaagaagctggaaattgatgcttcgatgttaaagtggttttttaccatgattttaagtaaaacgtgatttgcag 326  Q
    ||||||||||||||||||  ||||   |||||  ||||||||||  |||||||| |||||| ||| ||||||||||||||||    
T  28739678 cgtgattttaagaagctgagaattagagcttctttgttaaagtgactttttaccgtgatttcaagcaaaacgtgatttgcag 28739597  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 30872674 - 30872597
Alignment:
Q  184 tgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagct 261  Q
    |||||| |||| |||||||| |||||||| |||||||||||||| |   || ||||| |||| |||||||||||||||    
T  30872674 tgtttggagtgacgtttgataaagcaaaaacacatctgcacactatttaatgtaaatttgtcatgattttaagaagct 30872597  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 5649516 - 5649598
Alignment:
Q  176 ttagtgcttgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaag 259  Q
    ||||||| ||||||||||| | ||||||||||||||| ||||| |||||||| |  ||| |||||||  | |||||||||||||    
T  5649516 ttagtgcctgtttgaagtgacttttgatgaagcaaaaacacat-tgcacactatttgatgtaaatctaccttgattttaagaag 5649598  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 325
Target Start/End: Original strand, 15301063 - 15301192
Alignment:
Q  198 tttgatgaagcaaaagcacatctgca-cactttacgatataaatctgtcgtgattttaagaagctggaaattgatgcttcgatgttaaagtg-gtttttt 295  Q
    |||||| |||||||| |||||||||| |||| | || | |||||||  | ||||||||||||||||  |||||  |||||  ||||||||||  ||||||    
T  15301063 tttgattaagcaaaatcacatctgcaacactattcggtgtaaatctaccatgattttaagaagctgagaattggagcttctgtgttaaagtgattttttt 15301162  T
Q  296 accatgattttaagtaaaacgtgatttgca 325  Q
     || |||||| ||| |||||||||||||||    
T  15301163 gccgtgatttcaagcaaaacgtgatttgca 15301192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 6777341 - 6777257
Alignment:
Q  178 agtgcttgtttgaagtggcgtttgatgaagcaaaagcacatctgcacactttacgatataaatctgtcgtgattttaagaagctg 262  Q
    ||||| |||||  |||||||||||||||||||||| ||| | | || ||| |  ||| ||||| || ||||||||||||||||||    
T  6777341 agtgcatgttttgagtggcgtttgatgaagcaaaatcacgtatacatactatttgatgtaaatttgccgtgattttaagaagctg 6777257  T

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