View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12593_low_3 (Length: 454)

Name: NF12593_low_3
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12593_low_3
NF12593_low_3
[»] chr8 (3 HSPs)
chr8 (11-436)||(26461789-26462218)
chr8 (166-223)||(8108263-8108320)
chr8 (147-223)||(22209439-22209515)
[»] chr7 (1 HSPs)
chr7 (139-223)||(40065772-40065856)
[»] chr2 (1 HSPs)
chr2 (164-215)||(29866443-29866494)
[»] chr3 (1 HSPs)
chr3 (141-215)||(25958464-25958538)
[»] chr4 (3 HSPs)
chr4 (147-223)||(50774994-50775070)
chr4 (142-215)||(2137227-2137300)
chr4 (147-218)||(42627941-42628012)
[»] chr1 (2 HSPs)
chr1 (146-217)||(34652463-34652534)
chr1 (143-223)||(36621966-36622046)
[»] scaffold0178 (1 HSPs)
scaffold0178 (164-217)||(15908-15961)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 26462218 - 26461789
Alignment:
Q  11 cagagaggcagcagtgatgatgagtggattgacaatttttctaaaattttagatgcgtgtagttttattattattaggaaaatacnnnnnnngagtaaat 110  Q
    |||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||  |||||||||||||| ||||||||||       ||||||||    
T  26462218 cagagaggcagcagtgatgatgagtggattgacaacgtctctaaaattttagatgggtacagttttattattataaggaaaatactttttttgagtaaat 26462119  T
Q  111 tattagaaaaatatcaacgagtgcatttgaatactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaa 210  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  26462118 tattagaaaaatactaacgagtgcatttgaatactctttaaaaatcataagttataagtatttataaaaatatatgtgttcaatacattaaaaatcaaaa 26462019  T
Q  211 tatttaacattttatctaaaaattgtctaatttaaaatatttgaatactacatgac-nnnnnnnnattctataatatccgctggacgttataaatcaaat 309  Q
    ||||||||||||| |  ||||||||| |||||||||||||||||||||||||||||         | |||||||||||||||| ||||||||| ||||||    
T  26462018 tatttaacatttttttaaaaaattgtttaatttaaaatatttgaatactacatgactttttttttactctataatatccgctgaacgttataactcaaat 26461919  T
Q  310 tatcgaaatatatgtacctaaaaacatttgatgaataaacacttaact---tcatctattgtaagtcaaatttatggacatctattgagattaaattaaa 406  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26461918 tatcaaaatatatgtacctaagaacatttgatgaataaacacttaacttcatcatctattgtaagtcaaatttatggacatctattgagattaaattaaa 26461819  T
Q  407 tccaactacatttcttaatcgagaataagt 436  Q
    || |||||||||||||||||||||||||||    
T  26461818 tctaactacatttcttaatcgagaataagt 26461789  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 8108263 - 8108320
Alignment:
Q  166 aagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt 223  Q
    |||||||||| ||||||| |||  |||||||||  |||||||||||||||||| ||||    
T  8108263 aagtatttatgaaaatgtgtgtaatcaatatatccaaaatcaaaatatttaacttttt 8108320  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 22209515 - 22209439
Alignment:
Q  147 tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt 223  Q
    |||||||| ||||| |  ||||||||||| ||||| |||||  ||||| | ||| ||||||||||||||||| ||||    
T  22209515 tttaaaaaccataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttt 22209439  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 40065772 - 40065856
Alignment:
Q  139 gaatactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt 223  Q
    ||||||| ||||| ||||||||||  |||||||||||||||||  |||| ||| || ||||||||||||||||||||||| ||||    
T  40065772 gaatactatttaagaatcataagtggtaagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttt 40065856  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 29866443 - 29866494
Alignment:
Q  164 ataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt 215  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  29866443 ataagtatttatgaaaatgtatgtattcaatatatttaaaatcaaaatattt 29866494  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 25958538 - 25958464
Alignment:
Q  141 atactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt 215  Q
    ||||| ||||| || ||||| | |||||||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  25958538 atactttttaagaaccataaatgataagtatttttaaaaatgtgtgtgatcaatatattgtaaatcaaaatattt 25958464  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 50775070 - 50774994
Alignment:
Q  147 tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt 223  Q
    ||||| |||||||||| |||| ||||||| ||||| | |||  ||||||| ||||||||||||||||||||| ||||    
T  50775070 tttaagaatcataagtaataaatatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttt 50774994  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 2137300 - 2137227
Alignment:
Q  142 tactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt 215  Q
    |||| ||||| |||||||||| |||||||||||| ||||| | |||  ||||||||||  ||||||||||||||    
T  2137300 tactgtttaagaatcataagtaataagtatttatgaaaatatgtgtaatcaatatattataaatcaaaatattt 2137227  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 42627941 - 42628012
Alignment:
Q  147 tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaac 218  Q
    ||||||||| ||||||  |||||||| || ||||| | | | |||||| |||||||||||||||||||||||    
T  42627941 tttaaaaattataagtggtaagtattaatgaaaatatgtatattcaatgtattgaaaatcaaaatatttaac 42628012  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 34652463 - 34652534
Alignment:
Q  146 ctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaa 217  Q
    |||||||||| |||||| |||  | ||||||||||| ||||| ||||||||||| ||||| ||| |||||||    
T  34652463 ctttaaaaattataagtaatagatttttataaaaatatatgtattcaatatattaaaaattaaactatttaa 34652534  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 36622046 - 36621966
Alignment:
Q  143 actctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt 223  Q
    ||||||||| |  ||||||| |||||||||| |||||||| ||||  ||| | | ||| ||||||||||||||||| ||||    
T  36622046 actctttaagacccataagtaataagtatttttaaaaatgcatgtaatcattgttttggaaatcaaaatatttaacttttt 36621966  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 15961 - 15908
Alignment:
Q  164 ataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaa 217  Q
    |||| ||||||||||||||| ||| ||  || ||||||||||||||||||||||    
T  15961 ataaatatttataaaaatgtgtgtatttgatgtattgaaaatcaaaatatttaa 15908  T

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