View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12593_low_4 (Length: 449)
Name: NF12593_low_4
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12593_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Original strand, 47717677 - 47718097
Alignment:
| Q |
14 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47717677 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctc |
47717776 |
T |
|
| Q |
114 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717777 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
47717876 |
T |
|
| Q |
214 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717877 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtcc |
47717976 |
T |
|
| Q |
314 |
actttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717977 |
actttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtt |
47718076 |
T |
|
| Q |
414 |
tggacaaagttttgtgagaag |
434 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47718077 |
tggacaaagttttgtgagaag |
47718097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 434
Target Start/End: Original strand, 47745466 - 47745886
Alignment:
| Q |
14 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctc |
113 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||| ||||||||||| |||| |||| |||||||| |||| || | ||| ||||| ||||||||||||| |
|
|
| T |
47745466 |
agaaggaatatatttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctc |
47745565 |
T |
|
| Q |
114 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
213 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47745566 |
taaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaactta |
47745665 |
T |
|
| Q |
214 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtcc |
313 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| | | ||| |
|
|
| T |
47745666 |
cgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacatttctattgttcc |
47745765 |
T |
|
| Q |
314 |
actttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtt |
413 |
Q |
| |
|
|||| |||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||| | |
|
|
| T |
47745766 |
acttataatatgaaaatgaagtatccataatgccaaatattgatcggtttgagtaacgcaacatgcagttatcataccaactaattgcttctttttgggt |
47745865 |
T |
|
| Q |
414 |
tggacaaagttttgtgagaag |
434 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47745866 |
tggacaaagttttgtgagaag |
47745886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 434
Target Start/End: Original strand, 47759801 - 47760218
Alignment:
| Q |
26 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaaacaatcatt |
125 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||| |||| |||| |||||||||| || || | ||||| ||| | ||||||| |||||||||| ||| |
|
|
| T |
47759801 |
tttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattatt |
47759900 |
T |
|
| Q |
126 |
gcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaa---------gttgcattagcggtagcaaacttacga |
216 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| |||||||||||| |||||| |||||||||| ||||||||| | |||||||| |||||| |
|
|
| T |
47759901 |
gcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacga |
47760000 |
T |
|
| Q |
217 |
cgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtccact |
316 |
Q |
| |
|
||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| | | | ||||| |
|
|
| T |
47760001 |
cgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacattatatatgttccaca |
47760100 |
T |
|
| Q |
317 |
ttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttgg |
416 |
Q |
| |
|
| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
47760101 |
tataaaactttggtgaaccttccataacgccgaatattgatcggtttgagtaacgcaacatgcagttatcataccaaccaattgcttctttttggtttgg |
47760200 |
T |
|
| Q |
417 |
acaaagttttgtgagaag |
434 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47760201 |
acaaagttttgtgagaag |
47760218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 434
Target Start/End: Original strand, 47712881 - 47713303
Alignment:
| Q |
21 |
atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaaacaa |
120 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||| | |||||| |||||||||| |
|
|
| T |
47712881 |
atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa |
47712980 |
T |
|
| Q |
121 |
tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaact |
211 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | | |||||||| |
|
|
| T |
47712981 |
tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact |
47713080 |
T |
|
| Q |
212 |
tacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggt |
311 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||| ||| | | |
|
|
| T |
47713081 |
taagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggttacattgttcgggtt |
47713180 |
T |
|
| Q |
312 |
ccactttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttgg |
411 |
Q |
| |
|
| || | || | ||||| ||| | || ||| ||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
47713181 |
cgacatataaaactttggtgaccattcaagaatgccaaatattgattggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttgg |
47713280 |
T |
|
| Q |
412 |
tttggacaaagttttgtgagaag |
434 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47713281 |
tttggacaaagttttgtgagaag |
47713303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 6523767 - 6523721
Alignment:
| Q |
386 |
cataccaaccaatcgcttctttttggtttggacaaagttttgtgaga |
432 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
6523767 |
cataccaaccaattgcttctttttggtttggacaaagctgtgtgaga |
6523721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 47704888 - 47704943
Alignment:
| Q |
26 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatta |
81 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| | || |||| |||||||||| |
|
|
| T |
47704888 |
tttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttatta |
47704943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 47778081 - 47778037
Alignment:
| Q |
388 |
taccaaccaatcgcttctttttggtttggacaaagttttgtgaga |
432 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||| ||||||| |
|
|
| T |
47778081 |
taccaaccaattgcttcctttttgtttggacaaagttgtgtgaga |
47778037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University