View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12593_low_6 (Length: 362)

Name: NF12593_low_6
Description: NF12593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12593_low_6
NF12593_low_6
[»] chr2 (12 HSPs)
chr2 (11-201)||(8884166-8884356)
chr2 (261-343)||(8884416-8884498)
chr2 (290-343)||(37559350-37559403)
chr2 (292-343)||(34643027-34643078)
chr2 (292-343)||(36772421-36772472)
chr2 (292-343)||(36793535-36793586)
chr2 (292-343)||(36756193-36756244)
chr2 (292-342)||(4713134-4713184)
chr2 (292-342)||(24359791-24359841)
chr2 (292-342)||(39082468-39082518)
chr2 (293-339)||(3197568-3197614)
chr2 (292-342)||(42968150-42968200)
[»] chr8 (7 HSPs)
chr8 (289-343)||(24864605-24864659)
chr8 (292-343)||(38085946-38085997)
chr8 (289-343)||(7895176-7895230)
chr8 (293-343)||(44415934-44415984)
chr8 (292-339)||(40866326-40866373)
chr8 (293-339)||(42014306-42014352)
chr8 (294-339)||(9963313-9963358)
[»] chr4 (8 HSPs)
chr4 (289-343)||(33871064-33871118)
chr4 (292-343)||(31553694-31553745)
chr4 (293-343)||(4690158-4690208)
chr4 (290-342)||(6067667-6067719)
chr4 (293-342)||(34505290-34505339)
chr4 (292-339)||(50968273-50968320)
chr4 (290-340)||(6071143-6071193)
chr4 (293-342)||(52818059-52818108)
[»] chr5 (1 HSPs)
chr5 (290-343)||(2626095-2626148)
[»] chr3 (9 HSPs)
chr3 (290-343)||(11580201-11580254)
chr3 (294-343)||(35679472-35679521)
chr3 (292-341)||(35687869-35687918)
chr3 (292-341)||(35692217-35692266)
chr3 (292-343)||(52638679-52638730)
chr3 (292-339)||(29618312-29618359)
chr3 (292-339)||(41552100-41552147)
chr3 (294-339)||(1488013-1488058)
chr3 (294-339)||(2031252-2031297)
[»] chr7 (6 HSPs)
chr7 (292-343)||(25287960-25288011)
chr7 (292-343)||(30034301-30034352)
chr7 (292-343)||(46075175-46075226)
chr7 (294-343)||(34984453-34984502)
chr7 (292-343)||(37022218-37022269)
chr7 (294-339)||(46972166-46972211)
[»] chr6 (8 HSPs)
chr6 (292-343)||(7432443-7432494)
chr6 (292-343)||(7441960-7442011)
chr6 (290-343)||(7425648-7425701)
chr6 (294-343)||(7433006-7433055)
chr6 (290-341)||(7414610-7414661)
chr6 (291-339)||(3992834-3992882)
chr6 (290-339)||(7418561-7418610)
chr6 (292-341)||(7420534-7420583)
[»] chr1 (10 HSPs)
chr1 (292-343)||(37369535-37369586)
chr1 (292-342)||(30340935-30340985)
chr1 (294-343)||(23057704-23057753)
chr1 (294-343)||(23058076-23058125)
chr1 (294-343)||(23062005-23062054)
chr1 (294-343)||(23057889-23057938)
chr1 (299-341)||(23057579-23057621)
chr1 (299-341)||(23061880-23061922)
chr1 (293-342)||(30320769-30320818)
chr1 (294-343)||(43065996-43066050)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 8884166 - 8884356
Alignment:
Q  11 cacagatcaaaccacgagtttattagctgcagaacaactactacacactgccattattctggttgaaataatttgtttgtacctcttgttcacacatgtg 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8884166 cacaaatcaaaccacgagtttattagctgcagaacaactactacacactgccattattctggttgaaataatttgtttgtacctcttgttcacacatgtg 8884265  T
Q  111 atgcaatttcagaaattcaagttaacatcaataataagaattaagcaggactctttacttatgttaccttagaaacataaaccactgctaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8884266 atgcaatttcagaaattcaagttaacatcaataataagaattaagcaggactctttacttatgttaccttagaaacataaaccactgctaa 8884356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 8884416 - 8884498
Alignment:
Q  261 catatttattgaaacatgaatgatatcaaaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8884416 catatttattgaaacatgaatgatatcaacaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 8884498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 37559403 - 37559350
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37559403 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 37559350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 34643078 - 34643027
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34643078 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 34643027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 36772472 - 36772421
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 36772421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 36793586 - 36793535
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 36793535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 36756244 - 36756193
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacg 36756193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 4713184 - 4713134
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 4713134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 24359791 - 24359841
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  24359791 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 24359841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 39082468 - 39082518
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  39082468 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 39082518  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 3197568 - 3197614
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  3197568 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 3197614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 42968150 - 42968200
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtac 42968200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 24864605 - 24864659
Alignment:
Q  289 aaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24864605 aaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 24864659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 38085946 - 38085997
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 38085997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 7895230 - 7895176
Alignment:
Q  289 aaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7895230 aaaatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 7895176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 44415934 - 44415984
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 44415984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 40866373 - 40866326
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  40866373 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 40866326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 42014306 - 42014352
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  42014306 tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagagg 42014352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 9963358 - 9963313
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagagg 9963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 33871118 - 33871064
Alignment:
Q  289 aaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33871118 aaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 33871064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 31553694 - 31553745
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 31553745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 343
Target Start/End: Complemental strand, 4690208 - 4690158
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 4690158  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 6067667 - 6067719
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  6067667 aaatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 6067719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 34505290 - 34505339
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 34505339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 50968320 - 50968273
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  50968320 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 50968273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 6071143 - 6071193
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggt 340  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| ||||||    
T  6071143 aaatggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggt 6071193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 52818059 - 52818108
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtac 52818108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 2626148 - 2626095
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626148 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 2626095  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 11580201 - 11580254
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11580201 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 11580254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 35679472 - 35679521
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 35679521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 35687869 - 35687918
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 35687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 35692217 - 35692266
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 35692266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 52638730 - 52638679
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacg 52638679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 29618312 - 29618359
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 29618359  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 41552100 - 41552147
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  41552100 atggggttgtagctcatatggtagagcgctcgcttcgcatgcgagagg 41552147  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 1488013 - 1488058
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagagg 1488058  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 2031252 - 2031297
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagagg 2031297  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 25287960 - 25288011
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25287960 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 25288011  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 30034301 - 30034352
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 30034352  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 46075226 - 46075175
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46075226 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 46075175  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 34984502 - 34984453
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34984502 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 34984453  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 37022269 - 37022218
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37022269 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 37022218  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 46972211 - 46972166
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagagg 46972166  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 7432494 - 7432443
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 7432443  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 7442011 - 7441960
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 7441960  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 7425701 - 7425648
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7425701 aaatggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacg 7425648  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 7433055 - 7433006
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacg 7433006  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 7414661 - 7414610
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 341  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  7414661 aaatggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggta 7414610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 3992882 - 3992834
Alignment:
Q  291 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  3992882 aatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 3992834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 7418610 - 7418561
Alignment:
Q  290 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 339  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||||    
T  7418610 aaatggggatgtagctcagatggtatagtgctcgcttagcatgtgagagg 7418561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 7420583 - 7420534
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 341  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||||||    
T  7420583 atggagatgtggatcagatggtagagtgctcgcttagcatgcgagaggta 7420534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 37369586 - 37369535
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37369586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 37369535  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 30340985 - 30340935
Alignment:
Q  292 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  30340985 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 30340935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 23057753 - 23057704
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 23057704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 23058125 - 23058076
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  23058125 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 23058076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 23062054 - 23062005
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 23062005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 23057938 - 23057889
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacg 343  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacg 23057889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 23057621 - 23057579
Alignment:
Q  299 tgtagctcagatggtagagcgctcgcttagcatgcgagaggta 341  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggta 23057579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 23061922 - 23061880
Alignment:
Q  299 tgtagctcagatggtagagcgctcgcttagcatgcgagaggta 341  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggta 23061880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 30320818 - 30320769
Alignment:
Q  293 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtac 342  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  30320818 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtac 30320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 43065996 - 43066050
Alignment:
Q  294 ggggatgtagctcagatggtagagcgctcg-----cttagcatgcgagaggtacg 343  Q
    |||||||||||||| |||||||||||||||     ||||||||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacg 43066050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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