View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12594_high_3 (Length: 380)

Name: NF12594_high_3
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12594_high_3
NF12594_high_3
[»] chr1 (21 HSPs)
chr1 (57-366)||(33166302-33166612)
chr1 (57-366)||(47298261-47298571)
chr1 (59-358)||(17677025-17677326)
chr1 (57-366)||(38837401-38837708)
chr1 (72-354)||(17785373-17785656)
chr1 (67-361)||(51522345-51522640)
chr1 (68-361)||(18318491-18318805)
chr1 (72-360)||(48406431-48406741)
chr1 (179-366)||(8470345-8470533)
chr1 (182-366)||(31470283-31470468)
chr1 (182-366)||(45241135-45241320)
chr1 (182-366)||(48386036-48386221)
chr1 (182-366)||(2475980-2476165)
chr1 (72-162)||(8470571-8470661)
chr1 (74-171)||(2475851-2475948)
chr1 (74-171)||(48385907-48386004)
chr1 (74-145)||(31470526-31470597)
chr1 (74-145)||(45241378-45241449)
chr1 (313-366)||(8470267-8470321)
chr1 (313-361)||(8470311-8470360)
chr1 (313-366)||(31470164-31470218)
[»] chr8 (8 HSPs)
chr8 (57-366)||(30530339-30530649)
chr8 (68-358)||(17743697-17743988)
chr8 (73-358)||(27359178-27359485)
chr8 (73-358)||(27368535-27368842)
chr8 (179-366)||(15055644-15055832)
chr8 (182-366)||(1956140-1956325)
chr8 (74-171)||(15055862-15055959)
chr8 (74-171)||(1956011-1956108)
[»] chr4 (22 HSPs)
chr4 (59-366)||(33606100-33606408)
chr4 (57-366)||(34435248-34435551)
chr4 (72-334)||(36657588-36657849)
chr4 (70-315)||(28446348-28446593)
chr4 (63-360)||(53182147-53182430)
chr4 (179-361)||(16172705-16172888)
chr4 (182-358)||(2213136-2213313)
chr4 (182-366)||(8993783-8993968)
chr4 (182-366)||(13112561-13112746)
chr4 (182-366)||(46915330-46915515)
chr4 (182-366)||(3616105-3616290)
chr4 (182-366)||(3531116-3531301)
chr4 (72-145)||(16172577-16172650)
chr4 (74-171)||(3530987-3531084)
chr4 (74-171)||(3615976-3616073)
chr4 (74-171)||(8994000-8994097)
chr4 (74-171)||(13112778-13112875)
chr4 (74-171)||(46915201-46915298)
chr4 (74-145)||(2213007-2213078)
chr4 (313-366)||(16173046-16173100)
chr4 (313-366)||(16173085-16173139)
chr4 (313-361)||(16173161-16173210)
[»] scaffold1240 (1 HSPs)
scaffold1240 (72-366)||(438-733)
[»] chr3 (36 HSPs)
chr3 (72-356)||(33750690-33750975)
chr3 (72-356)||(50019124-50019409)
chr3 (62-366)||(26157819-26158124)
chr3 (59-241)||(33935416-33935598)
chr3 (57-180)||(33188782-33188905)
chr3 (182-366)||(17468511-17468696)
chr3 (182-366)||(25788561-25788746)
chr3 (182-366)||(42599216-42599401)
chr3 (182-366)||(47146368-47146553)
chr3 (179-366)||(42563007-42563195)
chr3 (182-366)||(25830518-25830703)
chr3 (182-366)||(30416317-30416502)
chr3 (59-218)||(51429136-51429295)
chr3 (182-366)||(10425513-10425698)
chr3 (182-366)||(6046189-6046374)
chr3 (179-358)||(21227202-21227382)
chr3 (70-139)||(30689548-30689617)
chr3 (179-366)||(21230380-21230569)
chr3 (271-366)||(33188901-33188997)
chr3 (74-171)||(6046060-6046157)
chr3 (74-171)||(30416188-30416285)
chr3 (74-171)||(42563224-42563321)
chr3 (74-145)||(17468754-17468825)
chr3 (68-139)||(21227443-21227514)
chr3 (74-145)||(25788432-25788503)
chr3 (74-145)||(25830389-25830460)
chr3 (74-145)||(42599087-42599158)
chr3 (74-145)||(47146611-47146682)
chr3 (293-366)||(51429027-51429100)
chr3 (74-171)||(10425384-10425481)
chr3 (313-366)||(42562775-42562829)
chr3 (313-366)||(42599466-42599520)
chr3 (313-361)||(42562741-42562790)
chr3 (313-366)||(42599585-42599639)
chr3 (318-366)||(47146329-47146378)
chr3 (264-305)||(53722743-53722784)
[»] chr6 (18 HSPs)
chr6 (57-358)||(18641310-18641612)
chr6 (57-366)||(24917314-24917624)
chr6 (72-336)||(8221238-8221523)
chr6 (182-366)||(17959151-17959336)
chr6 (182-366)||(633765-633950)
chr6 (182-366)||(6378283-6378468)
chr6 (182-366)||(34840506-34840691)
chr6 (68-294)||(24114211-24114456)
chr6 (74-171)||(34840723-34840820)
chr6 (74-145)||(634008-634079)
chr6 (74-145)||(6378154-6378225)
chr6 (74-145)||(17959022-17959093)
chr6 (313-366)||(8220870-8220924)
chr6 (313-366)||(8220909-8220963)
chr6 (313-361)||(8221159-8221208)
chr6 (313-366)||(8220948-8221002)
chr6 (313-366)||(24114153-24114207)
chr6 (319-366)||(24917615-24917663)
[»] chr2 (16 HSPs)
chr2 (68-361)||(31185960-31186253)
chr2 (68-366)||(31205674-31205976)
chr2 (72-278)||(4278258-4278462)
chr2 (191-366)||(40879700-40879874)
chr2 (182-366)||(8854094-8854279)
chr2 (182-366)||(9073773-9073958)
chr2 (182-366)||(30820470-30820655)
chr2 (182-366)||(7586390-7586575)
chr2 (182-366)||(12856974-12857159)
chr2 (74-171)||(7586261-7586358)
chr2 (74-145)||(8854337-8854408)
chr2 (74-145)||(12857217-12857288)
chr2 (74-145)||(30820341-30820412)
chr2 (74-145)||(9073644-9073715)
chr2 (264-305)||(6333067-6333108)
chr2 (313-366)||(9074023-9074077)
[»] scaffold0004 (1 HSPs)
scaffold0004 (67-366)||(104890-105190)
[»] chr7 (10 HSPs)
chr7 (59-366)||(32127959-32128267)
chr7 (59-366)||(26814180-26814488)
chr7 (74-366)||(22658944-22659258)
chr7 (182-366)||(22193311-22193496)
chr7 (182-366)||(36520527-36520712)
chr7 (74-145)||(22193554-22193625)
chr7 (74-171)||(36520744-36520841)
chr7 (313-366)||(22658660-22658714)
chr7 (313-366)||(22658699-22658753)
chr7 (318-361)||(22658626-22658670)
[»] chr5 (17 HSPs)
chr5 (179-366)||(29617379-29617567)
chr5 (179-366)||(30646715-30646902)
chr5 (182-366)||(4579104-4579289)
chr5 (57-178)||(34710303-34710424)
chr5 (182-366)||(32974211-32974396)
chr5 (182-366)||(40890822-40891007)
chr5 (182-366)||(27944651-27944836)
chr5 (72-162)||(30646587-30646677)
chr5 (74-171)||(29617253-29617350)
chr5 (74-171)||(32974082-32974179)
chr5 (74-162)||(27944877-27944965)
chr5 (313-366)||(27406294-27406348)
chr5 (264-305)||(34918157-34918198)
chr5 (74-171)||(40891039-40891136)
chr5 (74-145)||(4579347-4579418)
chr5 (313-366)||(29617719-29617773)
chr5 (313-361)||(29617758-29617806)
[»] scaffold0007 (1 HSPs)
scaffold0007 (179-366)||(167191-167379)
[»] scaffold0658 (2 HSPs)
scaffold0658 (68-184)||(6842-6958)
scaffold0658 (264-358)||(7020-7114)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 57 - 366
Target Start/End: Complemental strand, 33166612 - 33166302
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    ||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33166612 gcaaggacgctgctggcttggaggaggtggaaagggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaccttggt 33166513  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||    
T  33166512 gcaacaggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagaatcttgatgaccggaaaaaagagctgttggaaaagttg 33166413  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtc-ccagtgtttgctttaataattg 355  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| | ||| ||||||||||||    
T  33166412 gagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtctccaatttttactttaataattg 33166313  T
Q  356 tcagtgatgtc 366  Q
    |||||| ||||    
T  33166312 tcagtgttgtc 33166302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 57 - 366
Target Start/End: Original strand, 47298261 - 47298571
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    |||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47298261 gcaaggacactgctgccttggaggaagtggaaaaggagtggattgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaccttggt 47298360  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  47298361 gcaacaggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagtatctcgatgaccggaaaaaagagctgttggaaaagttg 47298460  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctag-tcccagtgtttgctttaataattg 355  Q
    |||| | ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||| |||  |||| ||||||||||||||||||    
T  47298461 gagcgtgagctgttttgaaattaattgcaatccaatatttgtttgtattcggtcaaaattgtcagtgttgtttagaccccaatgtttgctttaataattg 47298560  T
Q  356 tcagtgatgtc 366  Q
    |||||| ||||    
T  47298561 tcagtgttgtc 47298571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 59 - 358
Target Start/End: Original strand, 17677025 - 17677326
Alignment:
Q  59 aaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgc 158  Q
    ||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17677025 aaggacgttgttgccttggaggaagtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaccttggtgc 17677124  T
Q  159 aacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatc-ggaaaaaagagttgttggaaaagttgg 257  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  17677125 aacaggagaaaaacagaatgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaaagagctgttggaaaagttgg 17677224  T
Q  258 agcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcc-cagtgtttgctttaataattgt 356  Q
    ||| | |||| |||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| ||  |||||||| ||||||||||||    
T  17677225 agcgtgagctattttgaaattaattgcaatccaatatttgtttgtattcggtcaaaattgtcagtgttgtctagaccttagtgtttgttttaataattgt 17677324  T
Q  357 ca 358  Q
    ||    
T  17677325 ca 17677326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 366
Target Start/End: Original strand, 38837401 - 38837708
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    |||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||||||    
T  38837401 gcaaggacgctgcttccttggaggaagtgaaaaaggagtgggttgaattcaaagaaatcaaagtacaagagattgaacaattgaaatagttcaccttggt 38837500  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38837501 gcaacaggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaaattccgaagagcatctcgatgaccggaaaaaagagttgttggaaaagttg 38837600  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcc-cagtgtttgctttaataattg 355  Q
    |||| | ||||||||||||   |||| ||||| ||||||||||||||||| ||||||||| || |||||||| || || |||||||||||||||||||||    
T  38837601 gagcgtgagctgttttgaa---aattgcaatccaatatttgtttgtattcggtcaaaattgtcggtgttgtcaagacctcagtgtttgctttaataattg 38837697  T
Q  356 tcagtgatgtc 366  Q
    |||||| ||||    
T  38837698 tcagtgttgtc 38837708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 354
Target Start/End: Complemental strand, 17785656 - 17785373
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  17785656 ccttggaggtggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagtacaacttggtgcaacaggagaaaaa 17785557  T
Q  172 tagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttt 271  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |  ||||||| ||||||| | ||||||||    
T  17785556 cagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagctactggaaaacttggagcgtgagctgttt 17785457  T
Q  272 tgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtc-ccagtgtttgctttaataatt 354  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||    
T  17785456 tgaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtctagtctctagtgtttgctttaataatt 17785373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 67 - 361
Target Start/End: Complemental strand, 51522640 - 51522345
Alignment:
Q  67 tgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggag 166  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||    
T  51522640 tgctgccttggaggaggtggaaaaggagtgggttgaattcaaacaaatcaagctccaagagattgaacaattgaaagagttcaccttggtgcatcaggag 51522541  T
Q  167 aaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagc 266  Q
    ||||| | ||| ||||||| || | ||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||| | |||    
T  51522540 aaaaacaaattaaagaaaaggacattgtatgtaaagttaagttccgaagagcatctcgatgaccggaagaaagtgctgttggaaaagttggagcgtgagc 51522441  T
Q  267 tgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtc-ccagtgtttgctttaataattgtcagtg 361  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  51522440 tgttttgaaattaatttcactcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtctacagtgtttgctttaataattgtcagtg 51522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 68 - 361
Target Start/End: Original strand, 18318491 - 18318805
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggaga 167  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||||| | |||||||||||||||||||    
T  18318491 gctgccttggaggaggtggaaaaggagtgggttgaattcaaacaattcaaggagcaagagcttgaacaattgaaagagttaaccttggtgcaacaggaga 18318590  T
Q  168 aaaatagattga---------------------agaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgtt 246  Q
    |||| | |||||                     ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||| | ||    
T  18318591 aaaacaaattgatgaaagaaaatactaaagataagaaaatgaaactgtatctaaagtta-gttccgaagagcatctcgatgaccggaagaaagagctatt 18318689  T
Q  247 ggaaaagttggagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgct 345  Q
    |||||||||||||| | |||| |||  ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||| ||||||||    
T  18318690 ggaaaagttggagcgtgagctatttgaaaattaatttcaatcaaatatttgtttgtattcggttaaaattgtcagtgttgtctagtccccactgtttgct 18318789  T
Q  346 ttaataattgtcagtg 361  Q
    ||||||||||||||||    
T  18318790 ttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 360
Target Start/End: Complemental strand, 48406741 - 48406431
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaa-- 169  Q
    |||||||| |||||||||| ||||||||| ||||||||||| | |||| ||||||||||||||||||||||||| | ||||||||| ||||  |||||      
T  48406741 ccttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagttaaccttggtgaaacaacagaaaaa 48406642  T
Q  170 --------------aatagattgaag-----aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaa 250  Q
                  || ||| |||||     ||||||||| ||||| ||||||||||||||||||||||||||||||| || || |||||||||||||      
T  48406641 caagttgctgcaagaaaagactgaagctaagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccgaaagaaagagttgttgggg 48406542  T
Q  251 aagttggagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaa 349  Q
    |||||||||| | ||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48406541 aagttggagcgtgagctgtttgaaaattaattttaatcaaatatttgtttatattcagtcaaaattatcagtgttgtctagtcccgagtgtttgctttaa 48406442  T
Q  350 taattgtcagt 360  Q
    || ||||||||    
T  48406441 tatttgtcagt 48406431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 8470533 - 8470345
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||  ||||| |||||| ||||||||||| | ||||||||  || ||    
T  8470533 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagtaagagctgttgggaaagttggagcttgagctgtttaaaagtt 8470434  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| ||||    
T  8470433 aattttaattaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtc 8470345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 31470468 - 31470283
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  31470468 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 31470369  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  31470368 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 31470283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 45241320 - 45241135
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  45241320 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 45241221  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  45241220 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 45241135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 48386036 - 48386221
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  48386036 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 48386135  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  48386136 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 48386221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 2475980 - 2476165
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | || |||||  ||||||||    
T  2475980 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaat 2476079  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  2476080 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtc 2476165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 8470661 - 8470571
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaaca 162  Q
    |||||||| ||  |||||| ||||||||| ||||||||||| | |||| |||||||| |||||||||||||||| | ||||||||| ||||    
T  8470661 ccttggagaagacggaaaaggagtgggttcaattcaaagaattaaaggagcaagagactgaacaattgaaagagttaaccttggtggaaca 8470571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 2475851 - 2475948
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  2475851 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 2475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 48385907 - 48386004
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  48385907 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 48386004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 31470597 - 31470526
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  31470597 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 31470526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 45241449 - 45241378
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  45241449 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 45241378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 8470321 - 8470267
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  8470321 aattatcagtgttgtttagtccccagtgtttgctttaataattgtcagtgttgtc 8470267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 8470360 - 8470311
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtg 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  8470360 aattatcagtgttgtctagtccccagtgtttgctttaataattatcagtg 8470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 31470218 - 31470164
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  31470218 aattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 31470164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 57 - 366
Target Start/End: Original strand, 30530339 - 30530649
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  30530339 gcaaggacgctactgccttagaggaggtggaaaaggagtgggttgaattcaaacaaatcaaggtacaagagattgaacaattgaaagagttcaccttggt 30530438  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    | ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  30530439 gtaacaggagaaaaacagattgaagaaaatgaaattgtatgtaaagttaagttccaaagagcatctcgatgaccggaaaaaagagctgttggaaaagttg 30530538  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattg 355  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || |||| ||||||||||||    
T  30530539 gagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtcccgagcgtttactttaataattg 30530638  T
Q  356 tcagtgatgtc 366  Q
    |||||| ||||    
T  30530639 tcagtgttgtc 30530649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 68 - 358
Target Start/End: Complemental strand, 17743988 - 17743697
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggaga 167  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||   |||||| ||||||    
T  17743988 gctgccttggaggaggtggaaaaggagtggattgaattcaaagaaatcaaggtgcaagagattgaaaaattgaaagagttcaccgcagtgcaataggaga 17743889  T
Q  168 aaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagct 267  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||| | ||||    
T  17743888 aaaacagattgaagaaaatgaaattgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagacgttggaaaacttggagcgtgagct 17743789  T
Q  268 gttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtca 358  Q
    ||||  ||||||||||||||||| ||||||||||||||| || | |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  17743788 gtttgcaaattaatttcaatcaactatttgtttgtattcggtaataattgtcagtgttgtctagtccccagtgtttgctttaataattgtca 17743697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 73 - 358
Target Start/End: Complemental strand, 27359485 - 27359178
Alignment:
Q  73 cttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaat 172  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||| ||||||| ||||||||||||||||| | ||||||||| |||| ||||||||     
T  27359485 cttggaggaggtggaaaaggagtgggttgaattcaaagaattaaaggagcaagaggttgaacaattgaaagagttaaccttggtgaaacaagagaaaaac 27359386  T
Q  173 agattga---------------------agaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaa 251  Q
    | |||||                     ||||||||||| ||||| ||||||||||||||||||||||||||||||  || || ||||||||||||||||    
T  27359385 aaattgatgaaagaaaagactgaagctaagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaa 27359286  T
Q  252 agttggagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaat 350  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||| | ||||||||||||||||||    
T  27359285 agttggagcgtgagctgtttggaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaat 27359186  T
Q  351 aattgtca 358  Q
    ||||||||    
T  27359185 aattgtca 27359178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 73 - 358
Target Start/End: Complemental strand, 27368842 - 27368535
Alignment:
Q  73 cttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaat 172  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||| ||||||| ||||||||||||||||| | ||||||||| |||| ||||||||     
T  27368842 cttggaggaggtggaaaaggagtgggttgaattcaaagaattaaaggagcaagagtttgaacaattgaaagagttaaccttggtgaaacaagagaaaaac 27368743  T
Q  173 agattga---------------------agaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaa 251  Q
    | |||||                     ||||||||||| ||||| ||||||||||||||||||||||||||||||  || || ||||||||||||||||    
T  27368742 aaattgatgaaagaaaagactgaagctaagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaa 27368643  T
Q  252 agttggagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaat 350  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||| | ||||||||||||||||||    
T  27368642 agttggagcgtgagctgtttggaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaat 27368543  T
Q  351 aattgtca 358  Q
    ||||||||    
T  27368542 aattgtca 27368535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 15055832 - 15055644
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  |||||    
T  15055832 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaatt 15055733  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  15055732 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 15055644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 1956140 - 1956325
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  1956140 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 1956239  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  1956240 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 1956325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 15055959 - 15055862
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||| | ||||||||| ||||  |||||||    
T  15055959 ttggagaaggtggaaaatgagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagttaaccttggtgaaacaacagaaaaa 15055862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 1956011 - 1956108
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  1956011 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 1956108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 59 - 366
Target Start/End: Complemental strand, 33606408 - 33606100
Alignment:
Q  59 aaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgc 158  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  33606408 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcacgttggtgc 33606309  T
Q  159 aacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttgga 258  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  33606308 aacaggagaaaaacagattgaagaaattgaaactatatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagttgttggaagagttgga 33606209  T
Q  259 gcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctag-tcccagtgtttgctttaataattgtc 357  Q
    || | |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||| ||||| |||||||||||||     
T  33606208 gcgtgagctgttttgaaattaatttcaatcaaatatttgttggtattcggtcaaaattgtcagtgttgtctagttcccaatgtttactttaataattgtt 33606109  T
Q  358 agtgatgtc 366  Q
    |||| ||||    
T  33606108 agtgttgtc 33606100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 366
Target Start/End: Original strand, 34435248 - 34435551
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  34435248 gcaaggacgctgctgccttcgaggaggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaacttggt 34435347  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    |||||| |||||||| | |||||||||||||||| ||||||||||||||||||       ||||||||| || |||||||||||||||||||||||||||    
T  34435348 gcaacaagagaaaaacaaattgaagaaaatgaaattgtatgtaaagttaagtt-------gcatctcgacgaccggaaaaaagagttgttggaaaagttg 34435440  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattg 355  Q
    |||| | |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  34435441 gagcgtgagctattttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcaatgttgtctagtccctagtgtttgctttaataattg 34435540  T
Q  356 tcagtgatgtc 366  Q
    | |||| ||||    
T  34435541 ttagtgttgtc 34435551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 72 - 334
Target Start/End: Complemental strand, 36657849 - 36657588
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  36657849 ccttggaggaggtggaaaaggagtggattgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagtacaccttggtgcaaaaggagaaaaa 36657750  T
Q  172 tagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttt 271  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| || |||| ||||| ||||||| | ||||||||    
T  36657749 cagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcaatga-ccgaaaaaatagctgttagaaaacttggagcgtgagctgttt 36657651  T
Q  272 tgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcc 334  Q
      ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  36657650 gaaaattaatttcaatcaaatatttgtttgtatttggtcaaaattgtcagtgttgtctagtcc 36657588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 70 - 315
Target Start/End: Complemental strand, 28446593 - 28446348
Alignment:
Q  70 tgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaa 169  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28446593 tgccttggaggagggggaaaaggagtgggttgaattcaaacaaatcaaagtgcaagagattgaacaattgaaagagttcaccttggtgcaacaggagaaa 28446494  T
Q  170 aatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgt 269  Q
    || | ||| |||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||| |||||| ||||||||||||||| |  | || |||    
T  28446493 aacaaattaaagaaaatgaaattgtatgtaaagttaagtcccgaagagcatctcaatgaccggaagaaagagatgttggaaaagttggtgtttgagttgt 28446394  T
Q  270 tttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28446393 tttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 28446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 63 - 360
Target Start/End: Original strand, 53182147 - 53182430
Alignment:
Q  63 acgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaaca 162  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||   ||||||||||||| ||||||||   ||||  |||||||||    
T  53182147 acgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggataaagagattgaacatttgaaagactacaccaaggtgcaaca 53182246  T
Q  163 ggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcct 262  Q
    ||||||||| ||||||| |||||||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||| |||| || |    
T  53182247 ggagaaaaacagattgacgaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagctgttggaaaacttggtgcgt 53182346  T
Q  263 cagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtcta-gtcccagtgtttgctttaataattgtcagt 360  Q
     ||||||||||               |||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||    
T  53182347 gagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagt 53182430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 179 - 361
Target Start/End: Original strand, 16172705 - 16172888
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||| | |||||||| ||||||    
T  16172705 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttggaaatt 16172804  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtg 361  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  16172805 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttatctagtcccgagtgtttgctttaatatttgtcagtg 16172888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 358
Target Start/End: Original strand, 2213136 - 2213313
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  2213136 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 2213235  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtca 358  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||    
T  2213236 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtca 2213313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 8993968 - 8993783
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  8993968 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 8993869  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  8993868 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 8993783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 13112746 - 13112561
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  13112746 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 13112647  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  13112646 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 13112561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 46915330 - 46915515
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||| ||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  46915330 aaaatgaaaatgtatctaaagttaagggacgaagagcatgtcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 46915429  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  46915430 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 46915515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 3616105 - 3616290
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | || |||||  ||||||||    
T  3616105 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaat 3616204  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  3616205 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtc 3616290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 3531116 - 3531301
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| |||||||||    |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  3531116 aaaatgaaaatgtatctaaagttaaaggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcatgagctgtttgaaaattaat 3531215  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtc-ccagtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| ||||||||| ||||    
T  3531216 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtctcgactgtttgctttaatatttgtcagtgttgtc 3531301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 16172577 - 16172650
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||||| |||||||||| ||||||||| ||||||||||| | |||| |||||||||||||||||||||||||    
T  16172577 ccttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagag 16172650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 3530987 - 3531084
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  3530987 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 3531084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 3615976 - 3616073
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  3615976 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 3616073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 8994097 - 8994000
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  8994097 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 8994000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 13112875 - 13112778
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  13112875 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 13112778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 46915201 - 46915298
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  46915201 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 46915298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 2213007 - 2213078
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  2213007 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 2213078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 16173046 - 16173100
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  16173046 aattatcagtgttgtctagtcccgactgtttgctttaataattatcagtgttgtc 16173100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 16173085 - 16173139
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | ||||||||||||||| | |||||| ||||    
T  16173085 aattatcagtgttgtctagtcccgactgtttgctttaataaatatcagtgttgtc 16173139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 16173161 - 16173210
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtg 361  Q
    ||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  16173161 aattatcagtgttgtctagtcccgactgtttgctttaataaatatcagtg 16173210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 438 - 733
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  438 ccttggagggggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagtacaccttggtgcaacaggagaaaaa 537  T
Q  172 tagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttt 271  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||| | ||||||||    
T  538 cagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaagagctgttggaaaacttggagcgtgagctgttt 637  T
Q  272 tgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagtgatgtc 366  Q
     ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  638 ggaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtatagtccccagtgtttgctttaataattgtcagtgttgtc 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 72 - 356
Target Start/End: Complemental strand, 33750975 - 33750690
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||    
T  33750975 ccttggaggtggtggaaaaagagtgggttgaattcaaagaaatcaaggtgcaagatattgaacaattgaaagagtacaccatggtgcaacaggagaaaaa 33750876  T
Q  172 tagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttt 271  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| | |||| |||    
T  33750875 cagattgaagaaaatgaaattgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagaggtgttggaaaacttggagcgtgagcttttt 33750776  T
Q  272 tgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgt 356  Q
     ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  33750775 ggaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgt 33750690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 72 - 356
Target Start/End: Complemental strand, 50019409 - 50019124
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  50019409 ccttggaggaggtagaaaaggagtgggttgaattcaaagaaatcaaggtgaaagagattgaacaattgaaagagtacaccttggtgcaacatgagaaaaa 50019310  T
Q  172 tagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttt 271  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||| | ||||||||    
T  50019309 catattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagttgttggaaaacttggagcgtgagctgttt 50019210  T
Q  272 tgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgt 356  Q
     ||||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  50019209 ggaaattaatttcaatcaaatatttgtttgtattcgatcaaaattgttagtgttgtctagtccccagtgtttgctttaataattgt 50019124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 62 - 366
Target Start/End: Original strand, 26157819 - 26158124
Alignment:
Q  62 gacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaac 161  Q
    ||||||| || ||||||| |||||||||| ||||||||| || |||||||||||||||    |||||||||||||||||||||| ||| || |   ||||    
T  26157819 gacgctgatggcttggagcaggtggaaaaggagtgggttcaagtcaaagaaatcaaggatagagagattgaacaattgaaagagttcaactcgaatcaac 26157918  T
Q  162 aggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcc 261  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||| |||||||||  ||||||  |     
T  26157919 aggagaaaattagattgaagaaaatgaaactgtatgtaaagttaagttctgaagagcatcttgatgaccgaaaaaaagcgttgttggaggagttggtacg 26158018  T
Q  262 tcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagt 360  Q
    | || ||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||| |||| ||||| ||||||||| |||||||    
T  26158019 tgagttgttttgaaattaatttcagtcaaatatttggttgtattcggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagt 26158118  T
Q  361 gatgtc 366  Q
    | ||||    
T  26158119 gttgtc 26158124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 59 - 241
Target Start/End: Complemental strand, 33935598 - 33935416
Alignment:
Q  59 aaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgc 158  Q
    ||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||  ||||  |||||    
T  33935598 aaggacgttgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggagcaagagattgaacatttgaaagagtacaccaaggtgc 33935499  T
Q  159 aacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagag 241  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||| ||||||||||||    
T  33935498 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagag 33935416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 33188782 - 33188905
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  33188782 gcaaggacgctgctgccttggaggaagtggaaaaggagtgggttgaattcaaataaatcaaggtgcaagagattgaacaattgaaagagttcaccttggt 33188881  T
Q  157 gcaacaggagaaaaatagattgaa 180  Q
    ||||||||||||||| ||||||||    
T  33188882 gcaacaggagaaaaacagattgaa 33188905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 17468696 - 17468511
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  17468696 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 17468597  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  17468596 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 17468511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 25788561 - 25788746
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  25788561 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 25788660  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  25788661 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 25788746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 42599216 - 42599401
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  42599216 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 42599315  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  42599316 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 42599401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 47146553 - 47146368
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  47146553 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 47146454  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  47146453 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 47146368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 42563195 - 42563007
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  |||||    
T  42563195 aagaaaatgaaaatgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaatt 42563096  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||   |||||||||||||| ||||||||| ||||    
T  42563095 aattttaatcaaatatttgtttgtattcagtcaacattattagtgttgtctagtcccgtctgtttgctttaatatttgtcagtgttgtc 42563007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 25830518 - 25830703
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| || ||||||| | ||||||||  ||||||||    
T  25830518 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 25830617  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  25830618 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 25830703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 30416317 - 30416502
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  30416317 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 30416416  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  30416417 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 30416502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 51429295 - 51429136
Alignment:
Q  59 aaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgc 158  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||   ||||||||||||| |||||||||  ||||  |||||    
T  51429295 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggataaagagattgaacatttgaaagagtacaccaaggtgc 51429196  T
Q  159 aacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagc 218  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||    
T  51429195 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaacttctgaagagc 51429136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 10425513 - 10425698
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| | ||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  10425513 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccagaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 10425612  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  10425613 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 10425698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 6046189 - 6046374
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| |||||||||    |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  6046189 aaaatgaaaatgtatctaaagttaaaggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 6046288  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcc-cagtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||| ||||| |||||||||||||||||||||  | |||||||||||||| ||||||||| ||||    
T  6046289 tttaatcaaatatttgtttgtattccgtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtc 6046374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 21227382 - 21227202
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||| |||||||  |||||||||||||||| ||||| |||||| |||||| ||||||||  |   | |||||| ||||||    
T  21227382 aagaaaatgaaaatgtatctaaagctaagttctaaagagcatctcgatgaccggaagaaagagatgttgggaaagttgggccaagaactgtttggaaatt 21227283  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtca 358  Q
    |||||||||||| ||||||||||||||| |||||| ||  |||||||||| ||| ||| ||||||||||||||||||||||    
T  21227282 aatttcaatcaattatttgtttgtattcggtcaaacttggcagtgttgtcaagtccccggtgtttgctttaataattgtca 21227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 30689548 - 30689617
Alignment:
Q  70 tgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattg 139  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30689548 tgccttggaggaggtgggaaaggagtgggttcaattcaaagaaatcaaggtgcaagagattgaacaattg 30689617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 366
Target Start/End: Original strand, 21230380 - 21230569
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||| |||||||| |||||||||||||||| | ||| |||||  |||||||||||||||  |   | || ||| ||||||    
T  21230380 aagaaaatgaaaatgtatataaagataagttccaaagagcatctcgatgaccagaagaaagatatgttggaaaagttgggccaagaactatttggaaatt 21230479  T
Q  279 aatttcaatcaaatatttgtttgtattcag-tcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||| |||||| ||||||  ||  ||| |  |||| ||  ||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  21230480 aattttaatcaattatttgactgagttccgaccaaacttggcagtgctgtcaagtccccagtgtttgctttaataattgtcagtgatgtc 21230569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 33188901 - 33188997
Alignment:
Q  271 ttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcc-cagtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||| ||||| | ||||||||||||||| ||||||||| | |||||||||||| || ||||||||| ||||||||||||||||| ||||    
T  33188901 ttgaaattaattgcaatccagtatttgtttgtattcggtcaaaattgttagtgttgtctagacctcagtgtttgttttaataattgtcagtgttgtc 33188997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 6046060 - 6046157
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  6046060 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 6046157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 30416188 - 30416285
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  30416188 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 30416285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 42563321 - 42563224
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| | |||||||| || |||||| ||||||||||| | |||| ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  42563321 ttggagaatgtggaaaaggaatgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 42563224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 17468825 - 17468754
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  17468825 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 17468754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 21227514 - 21227443
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattg 139  Q
    ||||||||||||| |||||| ||||||||||||||||||||| || |||||| | ||||| |||||| ||||    
T  21227514 gctgccttggaggtggtggacaatgagtgggttgaattcaaacaattcaaggagaaagagcttgaacgattg 21227443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 25788432 - 25788503
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  25788432 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 25788503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 25830389 - 25830460
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  25830389 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 25830460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 42599087 - 42599158
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  42599087 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 42599158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 47146682 - 47146611
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  47146682 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 47146611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 51429100 - 51429027
Alignment:
Q  293 atttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||||| ||||||||| ||| ||||||||||| |||| ||||| |||||||||||||||||| ||||    
T  51429100 atttgtttgtattcggtcaaaattgtca-tgttgtctagttcccaatgtttactttaataattgtcagtgttgtc 51429027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 10425384 - 10425481
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||  | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  10425384 ttggagaaggtggaaaaggaatgggttcaattcaaagacttaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 10425481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 42562829 - 42562775
Alignment:
Q  313 aattatcagtgttgtctagtcc-cagtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||||||||||||| || ||||||||||||||||| |||||| ||||    
T  42562829 aattatcagtgttgtctagtcctcactgtttgctttaataattatcagtgttgtc 42562775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 42599466 - 42599520
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  42599466 aattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 42599520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 42562790 - 42562741
Alignment:
Q  313 aattatcagtgttgtctagtcc-cagtgtttgctttaataattgtcagtg 361  Q
    |||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  42562790 aattatcagtgttgtctagtccacactgtttgctttaataattatcagtg 42562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 42599585 - 42599639
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||| ||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  42599585 aattatcggtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 42599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 47146378 - 47146329
Alignment:
Q  318 tcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||||||||  |||||||||||||||| ||||||||| ||||    
T  47146378 tcagtgttgtctagtccgtagtgtttgctttaatatttgtcagtgttgtc 47146329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 53722784 - 53722743
Alignment:
Q  264 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 305  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  53722784 agctgtttgaaaattaatttcaatcaaatatttgtctgtatt 53722743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 57 - 358
Target Start/End: Complemental strand, 18641612 - 18641310
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    ||||||||| || || ||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||    
T  18641612 gcaaggacgttgttggcttggagcagctggaaaaggagtgggttgaattcaaagaaattaaggtgcaagagattgaagaattgaaaaagttcaccttggt 18641513  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  18641512 gcaacaggagacaaatagattgaagaaaatgaaattgtatataaagttaagttccgaagagcatctcgatgaccgaaaaaaagagttgttggagaagttg 18641413  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctag-tcccagtgtttgctttaataattg 355  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| | ||| |||||  |||||||||||    
T  18641412 gagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcgttcaaaattgtcagtgttgtctagtttccaatgtttagtttaataattg 18641313  T
Q  356 tca 358  Q
    |||    
T  18641312 tca 18641310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 57 - 366
Target Start/End: Original strand, 24917314 - 24917624
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    |||||||| ||| || ||||||  |||||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||| |||| |    
T  24917314 gcaaggacactgatggcttggaaaaggtggaaaaggagtgggttcaattcaaagaaatcaaggcccaagagattgaacaattgaaagagttcaacttgat 24917413  T
Q  157 gcaacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttg 256  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||  |||||    
T  24917414 gcaacaggagaaaaacaaattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagagctgttggaggagttg 24917513  T
Q  257 gagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattg 355  Q
    |||  | |||||||||||||||||||||| |||||||||||||||| ||  ||||||||| |||||||||||||||  ||| ||||| ||||||||||||    
T  24917514 gagagtaagctgttttgaaattaatttcagtcaaatatttgtttgtgtttggtcaaaattgtcagtgttgtctagtatccaatgtttactttaataattg 24917613  T
Q  356 tcagtgatgtc 366  Q
     ||||| ||||    
T  24917614 ccagtgttgtc 24917624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 72 - 336
Target Start/End: Complemental strand, 8221523 - 8221238
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||||| |||||||||| ||||||||| ||||||||||| | |||| |||||||||||||||||||||| || | ||||||||| ||||  |||||||    
T  8221523 ccttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaaaagttaaccttggtgaaacaaaagaaaaa 8221424  T
Q  172 tagattga---------------------agaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaa 250  Q
    ||  ||||                     ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||||| |    
T  8221423 taagttgatgcaagaaaagactaaagctaagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttggga 8221324  T
Q  251 aagttggagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccca 336  Q
    |||||||||| | ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8221323 aagttggagcgtgagctgtttgaaaattaattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccca 8221238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 17959151 - 17959336
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  17959151 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 17959250  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  17959251 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 17959336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 633950 - 633765
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| || ||||||| | ||||||||  ||||||||    
T  633950 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 633851  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  633850 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 633765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 6378283 - 6378468
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| || ||||||| | ||||||||  ||||||||    
T  6378283 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 6378382  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  6378383 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 6378468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 34840691 - 34840506
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  34840691 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 34840592  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  34840591 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 34840506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 24114456 - 24114211
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggaga 167  Q
    ||||||||||||||||| ||||| |||||| ||||||||||| || |||||  ||||||| ||||||||||||||||| | |||||||||||||| ||||    
T  24114456 gctgccttggaggaggttgaaaaggagtggattgaattcaaacaattcaagaagcaagagcttgaacaattgaaagagttaaccttggtgcaacatgaga 24114357  T
Q  168 aaaatagattga-------------------agaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttgg 248  Q
    |||| | |||||                   ||||||||||  || || ||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  24114356 aaaacaaattgatgaaggaaaagtgaagctaagaaaatgaagttgcatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagttgttgg 24114257  T
Q  249 aaaagttggagcctcagctgttttgaaattaatttcaatcaaatat 294  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||    
T  24114256 aaaagttggagcgtgagctgtttgaaaattaatttcaatcaaatat 24114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 34840820 - 34840723
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  34840820 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 34840723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 634079 - 634008
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  634079 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 634008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 6378154 - 6378225
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  6378154 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 6378225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 17959022 - 17959093
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  17959022 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 17959093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 8220924 - 8220870
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  8220924 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtc 8220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 8220963 - 8220909
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  8220963 aattatcagtgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtc 8220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 8221208 - 8221159
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtg 361  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  8221208 aattatcagtgttgtctaatccccagtgtttgctttaataattgtcagtg 8221159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 8221002 - 8220948
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  8221002 aattatcagtgttctctagtccccagtgtttgctttaataattatcagtgttgtc 8220948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 24114207 - 24114153
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    |||| |||||||||||||||||| |  ||||||||||||||||||||||| ||||    
T  24114207 aattgtcagtgttgtctagtccccacagtttgctttaataattgtcagtggtgtc 24114153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 24917615 - 24917663
Alignment:
Q  319 cagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||| | ||||| |||||||||||||||||| ||||    
T  24917615 cagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 24917663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 68 - 361
Target Start/End: Original strand, 31185960 - 31186253
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggaga 167  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| ||||    
T  31185960 gctgccttggaggaggtggaaaagaagtgggttgaattcaaagaaatcaaggtgcaagagatcgaacaattgaaagagttcaccgcggtgcaacatgaga 31186059  T
Q  168 aaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagct 267  Q
    || | |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||| |||||||||| ||||| | | ||||    
T  31186060 aatacagattgaagaaaatgaaactgtatgtaatgttaagttccggagaacatctcgatgaccggaaaaaagagatgttggaaaacttggaacgtgagct 31186159  T
Q  268 gttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcccagtgtttgctttaataattgtcagtg 361  Q
    ||||  ||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  31186160 gtttgaaaattaatttcaatcaaatatttgtttgtattcggtaataattgtcagtgttgtctagtcccagtgttttctttaataattgtcagtg 31186253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 31205674 - 31205976
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaa--atcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacagga 165  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||| |||||  ||||||||||||    
T  31205674 gctgccttggaggaggtggaaaaggagtgggttgaattcaaaaaataatcaaggtgcaatagatcgaacaattgaaagagttcaccgcggtgcaacagga 31205773  T
Q  166 gaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcag 265  Q
    |||||| |||||||||||||||||||||||||||| ||||||||| |||||  |||||||||| |||||||||||| |||||||||| |||||   | ||    
T  31205774 gaaaaacagattgaagaaaatgaaactgtatgtaatgttaagttctgaagaatatctcgatgaccggaaaaaagagatgttggaaaacttggaatgtgag 31205873  T
Q  266 ctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtg-ttgtctagt-cccagtgtttgctttaataattgtcagtgat 363  Q
    ||||||  ||||||||||||||||||||||||||||||||| || | |||| |||||| ||||||||| |||||||||||||||||||||||| |||| |    
T  31205874 ctgtttgaaaattaatttcaatcaaatatttgtttgtattcggtaataattgtcagtgtttgtctagtccccagtgtttgctttaataattgttagtgtt 31205973  T
Q  364 gtc 366  Q
    |||    
T  31205974 gtc 31205976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 72 - 278
Target Start/End: Complemental strand, 4278462 - 4278258
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  4278462 ccttggaggaggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaatttaaagagttcaccttggtgcaacaggagaaaaa 4278363  T
Q  172 tagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttt 271  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  ||||| || |||||||| ||||||||| | ||||||||    
T  4278362 cagattgaagaaaatgaaactgtatgtaaagttaagtttcgaagagcatctcgatgaccg--aaaaatagctgttggaagagttggagcgtgagctgttt 4278265  T
Q  272 tgaaatt 278  Q
     ||||||    
T  4278264 ggaaatt 4278258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 191 - 366
Target Start/End: Original strand, 40879700 - 40879874
Alignment:
Q  191 ctgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaatttcaatcaa 290  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  40879700 ctgtatgtaaagttaagttccaaagagcatctcgatgatcggaaaaaggagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaa 40879799  T
Q  291 atatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  40879800 atatttgtttg--ttcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtc 40879874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 8854279 - 8854094
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  8854279 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 8854180  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||| ||||    
T  8854179 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatcattgtcagtgttgtc 8854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 9073773 - 9073958
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  9073773 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 9073872  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  9073873 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 9073958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 30820470 - 30820655
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  30820470 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 30820569  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  30820570 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 30820655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 7586390 - 7586575
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  7586390 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 7586489  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  7586490 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 7586575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 12857159 - 12856974
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| || ||||||| | ||||||||  ||||||||    
T  12857159 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 12857060  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  12857059 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 12856974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 7586261 - 7586358
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  7586261 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 7586358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 8854408 - 8854337
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  8854408 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 8854337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 12857288 - 12857217
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  12857288 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 12857217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 30820341 - 30820412
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  30820341 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 30820412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 9073644 - 9073715
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || || ||| ||||||||||| | || | |||||||||||||||||||||||||    
T  9073644 ttggagaaggtggaaaaggaatgagttcaattcaaagaattaaaagggcaagagattgaacaattgaaagag 9073715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 6333067 - 6333108
Alignment:
Q  264 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 305  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  6333067 agctgtttggaaattaatttcaatcaaatatttgtctgtatt 6333108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 9074023 - 9074077
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||||||||||| || | |||||||||||||| ||||||||| ||||    
T  9074023 aattatcagtgttgtctagttccgactgtttgctttaatatttgtcagtgttgtc 9074077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 67 - 366
Target Start/End: Complemental strand, 105190 - 104890
Alignment:
Q  67 tgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggag 166  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| || |   |||||||||    
T  105190 tgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggcgcaagagattgaacaattgaaagagttcaactcgaatcaacaggag 105091  T
Q  167 aaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagc 266  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |  ||||||  ||||||||  | |||    
T  105090 aaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgcggttggaggagttggagtgtgagc 104991  T
Q  267 tgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctag-tcccagtgtttgctttaataattgtcagtgatgt 365  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||  ||||||||||||||||| |||    
T  104990 tgttttgaaattaatttcagtcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagttcccaatgtttattttaataattgtcagtgttgt 104891  T
Q  366 c 366  Q
    |    
T  104890 c 104890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 59 - 366
Target Start/End: Original strand, 32127959 - 32128267
Alignment:
Q  59 aaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgc 158  Q
    |||||||||| || ||||||| |||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||| || |   |    
T  32127959 aaggacgctgatggcttggagcaggtggaaaaggagtgggttcaattcaaagaaatcaaggcgcatgagattgaacaattgaaagagttcaactcgaatc 32128058  T
Q  159 aacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttgga 258  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||  |||||||    
T  32128059 aacaggagaaaaaaagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgttgttggaggagttgga 32128158  T
Q  259 gcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctag-tcccagtgtttgctttaataattgtc 357  Q
    || | |||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||| | ||| |||||  |||||||||||||    
T  32128159 gcgtgagctgttttgaaattaatttcagtcaaatatttgtttgtattcggtcaaaattgccagtgttgtctagtttccaatgtttattttaataattgtc 32128258  T
Q  358 agtgatgtc 366  Q
    |||| ||||    
T  32128259 agtgttgtc 32128267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 59 - 366
Target Start/End: Complemental strand, 26814488 - 26814180
Alignment:
Q  59 aaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgc 158  Q
    ||||||||||  | ||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| || |   |    
T  26814488 aaggacgctgacggcttggagcaggtggaaaaggagtgggttcaattcaaagaaatcaaggcgcaagagattgaacaattgaaagagttcaactcgaatc 26814389  T
Q  159 aacaggagaaaaatagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttgga 258  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||||||  |||||||    
T  26814388 aacatgagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgctgttggaggagttgga 26814289  T
Q  259 gcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtc 357  Q
    || | |||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||| ||||| ||||||||| |||     
T  26814288 gcgtgagctgttttgaaattaatttcagtcaaatatttgtttgtatttggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtt 26814189  T
Q  358 agtgatgtc 366  Q
    |||| ||||    
T  26814188 agtgttgtc 26814180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 366
Target Start/End: Complemental strand, 22659258 - 22658944
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaa---- 169  Q
    |||||| |||||||||| ||||||||| ||||||||||| | |||| ||||||||||||||||||||||||| | ||||||||| ||||  |||||        
T  22659258 ttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagttaaccttggtgaaacaacagaaaaaca 22659159  T
Q  170 ------------aatagattgaag-----aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaa 252  Q
                || ||| |||||     ||||||||| ||||| |||||||||||| |||||||||||||||||| ||||| |||||| ||||||        
T  22659158 agttgctgcaagaaaagactgaagctaagaaaatgaaaatgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaagagctgttggggct 22659059  T
Q  253 gttggagcctcagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtc-ccagtgtttgctttaata 351  Q
    |||||||| | ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  22659058 gttggagcgtgagctgtttgaaaattaattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtctcgagtgtttgctttaata 22658959  T
Q  352 attgtcagtgatgtc 366  Q
     ||||||||| ||||    
T  22658958 tttgtcagtgttgtc 22658944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 22193496 - 22193311
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| || ||||||| | ||||||||  ||||||||    
T  22193496 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 22193397  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  22193396 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 22193311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 36520712 - 36520527
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  36520712 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 36520613  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  36520612 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 36520527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 22193625 - 22193554
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | |||||||||||||||||||||||||    
T  22193625 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 22193554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 36520841 - 36520744
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||  | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  36520841 ttggagaaggtggaaaaggaatgggttcaattcaaagagttaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 36520744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 22658714 - 22658660
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | | |||||||||||| ||||||||| ||||    
T  22658714 aattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtc 22658660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 22658753 - 22658699
Alignment:
Q  313 aattatcagtgttgtctagtcc-cagtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||  | ||||||||||||||||| |||||| ||||    
T  22658753 aattatcagtgttgtctagtcctgactgtttgctttaataattatcagtgttgtc 22658699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 22658670 - 22658626
Alignment:
Q  318 tcagtgttgtctagtccc-agtgtttgctttaataattgtcagtg 361  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||    
T  22658670 tcagtgttgtctagtccccactgtttgctttaataattatcagtg 22658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 179 - 366
Target Start/End: Original strand, 29617379 - 29617567
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||| || || |||||| ||||||  |||||||||| | ||||||||  |||||    
T  29617379 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatctcgatgaccgaaagaaagagctgttggggaagttggagcgtgagctgtttgaaaatt 29617478  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  29617479 aattttaatcaaatatttgtttgtatttagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 29617567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 179 - 366
Target Start/End: Original strand, 30646715 - 30646902
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||||||| || |  |||||| |||||||||||||||||| | ||||||||  |||||    
T  30646715 aagaaaatgaaa-tgtatctaaagttaagttatgaagagcatctcgatgaccgaatgaaagagctgttggaaaagttggagcgtgagctgtttgaaaatt 30646813  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtc-ccagtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  30646814 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcacgagtgtttgctttaatatttgtcagtgttgtc 30646902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 4579289 - 4579104
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||| |||||||||| | ||||||||  ||||||||    
T  4579289 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 4579190  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  4579189 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtc 4579104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 34710424 - 34710303
Alignment:
Q  57 gcaaggacgctgctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggt 156  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34710424 gcaaggatgttgctgccttggaggaggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgagcaattgaaagagttcaccttggt 34710325  T
Q  157 gcaacaggagaaaaatagattg 178  Q
    ||||||||||||||| ||||||    
T  34710324 gcaacaggagaaaaacagattg 34710303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 32974211 - 32974396
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  32974211 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 32974310  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||| ||||||||| ||||    
T  32974311 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtc 32974396  T

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Target: chr5; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 40891007 - 40890822
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  40891007 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 40890908  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcc-cagtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||  | |||||||||||||| ||||||||| ||||    
T  40890907 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtc 40890822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 27944836 - 27944651
Alignment:
Q  182 aaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaattaat 281  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||| ||||| || ||| ||||||  |||||||||| | ||||||||  ||||||||    
T  27944836 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 27944737  T
Q  282 ttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctag-tcccagtgtttgctttaataattgtcagtgatgtc 366  Q
    || |||||||||||||||||||||||||||| |||||||||| ||||||| ||| | |||||||||||||| ||||||||| ||||    
T  27944736 tttaatcaaatatttgtttgtattcagtcaacattatcagtgctgtctagttccgactgtttgctttaatatttgtcagtgttgtc 27944651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 30646587 - 30646677
Alignment:
Q  72 ccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaaca 162  Q
    |||||||| |||||||||| ||||||||| ||||||||||| | |||| ||||||||||||||||||||||||| | ||||||||| ||||    
T  30646587 ccttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagttaaccttggtgaaaca 30646677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 29617253 - 29617350
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| ||||||||| ||||||||||| | |||| |||||| |||||||||||||||||| | ||||||||| ||||  |||||||    
T  29617253 ttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagatattgaacaattgaaagagttaaccttggtgaaacaacagaaaaa 29617350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 32974082 - 32974179
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  32974082 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 32974179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 27944965 - 27944877
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaaca 162  Q
    |||||| |||||||||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||    
T  27944965 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaaca 27944877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 27406294 - 27406348
Alignment:
Q  313 aattatcagtgttgtctagtcccag-tgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  27406294 aattatcagtgttgtctagtccctggtgtttgctttaataattgtcagtgttgtc 27406348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 34918157 - 34918198
Alignment:
Q  264 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 305  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34918157 agctgtttggaaattaatttcaatcaaatatttgtttgtatt 34918198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 40891136 - 40891039
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggagaaaaa 171  Q
    |||||| ||||| |||| || |||||| ||||||||||| | || | ||||||||||||||||||||||||| | || |||||| ||||  |||||||    
T  40891136 ttggagaaggtgaaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagttaactttggtgaaacaacagaaaaa 40891039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 4579418 - 4579347
Alignment:
Q  74 ttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagag 145  Q
    |||||| |||||||||| || || ||| ||||||||||| | || | |||||||||||||||||||||||||    
T  4579418 ttggagaaggtggaaaaggaatgagttcaattcaaagaattaaaagagcaagagattgaacaattgaaagag 4579347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 29617719 - 29617773
Alignment:
Q  313 aattatcagtgttgtctagtccc-agtgtttgctttaataattgtcagtgatgtc 366  Q
    ||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  29617719 aattatcagtgttgtctagtcccgactgtttgctttaataattatcagtgttgtc 29617773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 29617758 - 29617806
Alignment:
Q  313 aattatcagtgttgtctagtcccagtgtttgctttaataattgtcagtg 361  Q
    ||||||||||||||||||  |||| ||||||||||||||||| ||||||    
T  29617758 aattatcagtgttgtctatccccactgtttgctttaataattatcagtg 29617806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 179 - 366
Target Start/End: Original strand, 167191 - 167379
Alignment:
Q  179 aagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgatcggaaaaaagagttgttggaaaagttggagcctcagctgttttgaaatt 278  Q
    |||||||||||| ||||| ||||| ||||||| || |||||| ||||||| ||||| ||| ||||||||||||||||||  |   || ||||| ||||||    
T  167191 aagaaaatgaaaatgtatataaagctaagttctgaggagcatttcgatgaccggaagaaaaagttgttggaaaagttgggccaagagttgtttggaaatt 167290  T
Q  279 aatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtcagtgatgtc 366  Q
    |||||||||||| |||||||||| |||| |||||| || |||||  |||| ||| ||||||||||||| ||||||||||||||||||||    
T  167291 aatttcaatcaagtatttgtttgcattcggtcaaacttgtcagtagtgtcaagtccccagtgtttgctctaataattgtcagtgatgtc 167379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 6842 - 6958
Alignment:
Q  68 gctgccttggaggaggtggaaaatgagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagctcaccttggtgcaacaggaga 167  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | |||| || |||||| ||||||||||||||| | ||||||||| |||| ||||    
T  6842 gctgccttggaggaggtggaaaaggagtgggttgaattcaaagaattaaaggagcgagagatggaacaattgaaagagttaaccttggtgaaacaagaga 6941  T
Q  168 aaaatagattgaagaaa 184  Q
    |||| | ||||| ||||    
T  6942 aaaacaaattgatgaaa 6958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 358
Target Start/End: Original strand, 7020 - 7114
Alignment:
Q  264 agctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagt-cccagtgtttgctttaataattgtca 358  Q
    |||||||| ||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  7020 agctgtttggaaattaatttcaatcaaatagttgtttgta-tcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtca 7114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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