View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12594_low_1 (Length: 598)

Name: NF12594_low_1
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12594_low_1
NF12594_low_1
[»] chr2 (3 HSPs)
chr2 (440-527)||(34984640-34984727)
chr2 (480-526)||(34992584-34992630)
chr2 (500-532)||(27582719-27582751)
[»] chr3 (2 HSPs)
chr3 (42-77)||(14841197-14841232)
chr3 (328-385)||(28518883-28518940)
[»] chr4 (3 HSPs)
chr4 (89-261)||(50435115-50435287)
chr4 (313-382)||(22906450-22906519)
chr4 (313-382)||(22958118-22958187)
[»] chr1 (1 HSPs)
chr1 (328-388)||(40387730-40387790)
[»] chr5 (2 HSPs)
chr5 (328-379)||(27410008-27410059)
chr5 (332-382)||(40085187-40085237)
[»] chr8 (1 HSPs)
chr8 (332-390)||(25660124-25660182)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 440 - 527
Target Start/End: Original strand, 34984640 - 34984727
Alignment:
Q  440 aagttaggtttagaatctggttcgttaatttaatctaacggctattattgaaggttctcatttttcacattaagtattagttctcact 527  Q
    ||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||| || ||| ||||||||||||| ||||||||||    
T  34984640 aagttaggtttagaatctggtccgttaatttaatccaacgactattattgatggttatcgtttctcacattaagtataagttctcact 34984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 526
Target Start/End: Original strand, 34992584 - 34992630
Alignment:
Q  480 gctattattgaaggttctcatttttcacattaagtattagttctcac 526  Q
    ||||||||||| ||||||| ||| ||||||||||| |||||||||||    
T  34992584 gctattattgatggttctcgtttctcacattaagtgttagttctcac 34992630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 532
Target Start/End: Original strand, 27582719 - 27582751
Alignment:
Q  500 tttttcacattaagtattagttctcacttgata 532  Q
    ||||||||||||||||||||||||||| |||||    
T  27582719 tttttcacattaagtattagttctcacctgata 27582751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 14841232 - 14841197
Alignment:
Q  42 ccctaatacaaagtgtatcatccacatattggaggt 77  Q
    ||||||||||||||||||||||||||||||||||||    
T  14841232 ccctaatacaaagtgtatcatccacatattggaggt 14841197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 28518883 - 28518940
Alignment:
Q  328 ttctcatcatatactccaagaatccccaatcaacgaaatcatatgctttctcaaaatc 385  Q
    ||||||||||||||||||| || |||||||| ||| |||||||||| || ||||||||    
T  28518883 ttctcatcatatactccaaaaaaccccaatccacggaatcatatgccttttcaaaatc 28518940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 261
Target Start/End: Complemental strand, 50435287 - 50435115
Alignment:
Q  89 gtacctccacttttcacctcaaaacctttgaacaagtttctttcaaccacattagacactacaacactaaatccttcgcccacaagtaagacaaaaaatg 188  Q
    |||||||| ||| ||||||||||||||||||||||||| |  | |||| |||| ||||  | | ||||||| |||||| |||| |  | ||  ||||| |    
T  50435287 gtacctcctcttatcacctcaaaacctttgaacaagttacggttaaccgcatttgacatcaaaccactaaaaccttcggccaccaaaaggaacaaaaaag 50435188  T
Q  189 gtgccaacatatcccattgctttagtcctctttgaacactagtctccttcgtagggatcccatttacaagaat 261  Q
    |||| | |  ||||| ||||||||| |||||||| |||| | ||||||  || ||| ||||||| ||||||||    
T  50435187 gtgcaagcggatccccttgctttaggcctctttggacacaaatctcctcggttgggctcccattaacaagaat 50435115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 382
Target Start/End: Original strand, 22906450 - 22906519
Alignment:
Q  313 cacacaacccaagctttctcatcatatactccaagaatccccaatcaacgaaatcatatgctttctcaaa 382  Q
    |||||| ||| | |||| |||||||||||||||| || |||||||| ||| | |||||||| ||||||||    
T  22906450 cacacatccctacctttttcatcatatactccaaaaacccccaatccacggagtcatatgccttctcaaa 22906519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 382
Target Start/End: Original strand, 22958118 - 22958187
Alignment:
Q  313 cacacaacccaagctttctcatcatatactccaagaatccccaatcaacgaaatcatatgctttctcaaa 382  Q
    |||||| ||| | |||| |||||||||||||||| || |||||||| ||| | |||||||| ||||||||    
T  22958118 cacacatccctacctttttcatcatatactccaaaaacccccaatccacggagtcatatgccttctcaaa 22958187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 40387730 - 40387790
Alignment:
Q  328 ttctcatcatatactccaagaatccccaatcaacgaaatcatatgctttctcaaaatctac 388  Q
    ||||||||||||||||||| || |||||||| ||  | |||||||| ||||||||||||||    
T  40387730 ttctcatcatatactccaaaaagccccaatctaccgagtcatatgccttctcaaaatctac 40387790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 27410008 - 27410059
Alignment:
Q  328 ttctcatcatatactccaagaatccccaatcaacgaaatcatatgctttctc 379  Q
    ||||||||||||||||||| || |||||||||||| | |||||| |||||||    
T  27410008 ttctcatcatatactccaaaaaaccccaatcaacggagtcatatactttctc 27410059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 40085237 - 40085187
Alignment:
Q  332 catcatatactccaagaatccccaatcaacgaaatcatatgctttctcaaa 382  Q
    |||||||||| |||| ||||||||||| ||| | |||||||||||||||||    
T  40085237 catcatatacaccaaaaatccccaatcgacggagtcatatgctttctcaaa 40085187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 25660182 - 25660124
Alignment:
Q  332 catcatatactccaagaatccccaatcaacgaaatcatatgctttctcaaaatctactt 390  Q
    |||||||||||||||||| |||||||| ||  ||||||| || |||||||| |||||||    
T  25660182 catcatatactccaagaaaccccaatccaccgaatcatacgccttctcaaagtctactt 25660124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University