View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_11 (Length: 336)
Name: NF12594_low_11
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 15801246 - 15800937
Alignment:
| Q |
11 |
tcgttcactgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgc |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801246 |
tcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgc |
15801147 |
T |
|
| Q |
111 |
cccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttggcaatggtgcttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801146 |
cccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttggcaatggtgcttt |
15801047 |
T |
|
| Q |
211 |
tgccaatccctcccattccccaaatccctactaaacaaactcctcttgtattctttcttagaaactgaatcaatttttccgcacgggattctaatcctac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801046 |
tgccaatccctcccattccccaaatccctactaaacaaactcctcttgtattctttcttagaaactgaatcaatttttccgcacgggattctaatcctac |
15800947 |
T |
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| Q |
311 |
tggaaaatct |
320 |
Q |
| |
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|||||||||| |
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| T |
15800946 |
tggaaaatct |
15800937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 3313102 - 3312804
Alignment:
| Q |
21 |
atcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgccccctctctt |
120 |
Q |
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|||||||||||||| |||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
3313102 |
atcatagcttttccaaactcaacactatgcacctttatcttccttgttttgaggatatctgaaagaagttgttcttgtaaatcgattctacccctatctt |
3313003 |
T |
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| Q |
121 |
tctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttggcaatggtgcttttgccaatccc |
220 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3313002 |
tctcccaaacttctctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagatgactttggcaatggtgcttttgccaatccc |
3312903 |
T |
|
| Q |
221 |
tcccattccccaaatccctactaaacaaactcctcttgtattctttcttagaaactgaatcaatttttccgcacgggattctaatcctactggaaaatc |
319 |
Q |
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||||||||||||||||||||||||||||||||| || ||| | ||||| | || |||| ||| ||||||||||||||||| ||| ||||||||||| |
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| T |
3312902 |
tcccattccccaaatccctactaaacaaactccatctgaattatgtcttaaataccgaatagattgttccgcacgggattctagtccaactggaaaatc |
3312804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 3362477 - 3362176
Alignment:
| Q |
19 |
tgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgccccctctc |
118 |
Q |
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||||||||| |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||| || |
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| T |
3362477 |
tgatcatagtttttccttgctcaacactaagcacctttatctttcttgttttgaggatatctgaaagaaattgttcttgtaaatcgattctgcccctatc |
3362378 |
T |
|
| Q |
119 |
tttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttggcaatggtgcttttgccaatc |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
3362377 |
tttctcccaaacttctctaatattagcaaggaagctttgattttcaaattcataacaaagatcattgtagatgactttggcaatagtgcttttgccaatc |
3362278 |
T |
|
| Q |
219 |
cctcccattccccaaatccctactaaacaaactcctcttgtattctttcttagaaactgaatcaatttttccgcacgggattctaatcctactggaaaat |
318 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||| | ||||| ||| ||||| | ||||||||||||| ||||||||| ||| |||||| |
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| T |
3362277 |
ccccccatcccccaaatccctactaaacaaactcctcttgtattttgtcttaaaaatcgaatcgacttttccgcacggggttctaatccaacttgaaaat |
3362178 |
T |
|
| Q |
319 |
ct |
320 |
Q |
| |
|
|| |
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|
| T |
3362177 |
ct |
3362176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 3393406 - 3393705
Alignment:
| Q |
19 |
tgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgccccctctc |
118 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| || |
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| T |
3393406 |
tgatcatagcttttccttgctcaacactaagcacctttatctttcttgttttcaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatc |
3393505 |
T |
|
| Q |
119 |
tttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttggcaatggtgcttttgccaatc |
218 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||| |
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| T |
3393506 |
tttctcccaaacttctctaatattagcaacgaagctttgatcttcaaattcataacaaagatcattgtatatgactttggcaatagtgcttttgccaatc |
3393605 |
T |
|
| Q |
219 |
cctcccattccccaaatccctactaaacaaactcctcttgtattctttcttagaaactgaatcaatttttccgcacgggattctaatcctactggaaaat |
318 |
Q |
| |
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|| ||||| |||||||||||||||||||||||| ||||||||| | ||||| ||| ||||| ||||||||||||| || |||||| ||| |||||| |
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| T |
3393606 |
ccccccatcccccaaatccctactaaacaaacttttcttgtattttgtcttaaaaatcgaatcggcttttccgcacggggttttaatccaacttgaaaat |
3393705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 25567913 - 25567853
Alignment:
| Q |
180 |
ttattgtagacgactttggcaatggtgcttttgccaatccctcccattccccaaatcccta |
240 |
Q |
| |
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|||||||| | | |||| ||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
25567913 |
ttattgtaaatggcttttgcaatggtggttttgccaatccctcccataccccacatcccta |
25567853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5075823 - 5075883
Alignment:
| Q |
180 |
ttattgtagacgactttggcaatggtgcttttgccaatccctcccattccccaaatcccta |
240 |
Q |
| |
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|||||||| | | |||| ||||||||| |||| |||||||| ||||| ||||||||||||| |
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|
| T |
5075823 |
ttattgtaaatggcttttgcaatggtggttttaccaatcccacccataccccaaatcccta |
5075883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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