View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_12 (Length: 325)
Name: NF12594_low_12
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 43065435 - 43065732
Alignment:
| Q |
1 |
tcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttctattcatgcacgtgtttaatcg |
100 |
Q |
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| T |
43065435 |
tcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcgattcatgcacatgtttaatcg |
43065534 |
T |
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| Q |
101 |
caattctgaatcctatcgnnnnnnnatttatgaatcgctagttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcattttaacat |
200 |
Q |
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| T |
43065535 |
caattctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcattttaacat |
43065634 |
T |
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| Q |
201 |
taccatgccattattatattatcgtaatgnnnnnnnnnnagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
300 |
Q |
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| T |
43065635 |
taccatgccattattatattatcgtaatg--ttttttttagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
43065732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 43047473 - 43047402
Alignment:
| Q |
7 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43047473 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
169 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
219 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
21 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
73 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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