View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_16 (Length: 265)
Name: NF12594_low_16
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 13875445 - 13875671
Alignment:
| Q |
21 |
gactgaaagtagaagtgggtcgactactccttacaggactacaagtaggccttcctccggaccactcgccgggactttgacgccgccgacgattggtgcg |
120 |
Q |
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| T |
13875445 |
gactgaaagtagaagtgggtccactactccttacaggactacaagtaggccttcctccggaccactcgccgggactttgacgccgccggcgattgatgcg |
13875544 |
T |
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| Q |
121 |
gtggatataccttacttgagtttaagggagctgactatggagcaacaacaacaacagaggatgtctacctcggctatgcctatttactttgttacttgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13875545 |
gtggatataccttacttgagtttaagggagctgactatggagcagcaacaacaacagaggatgtctacctcggctatgcctatttactttgttacttgaa |
13875644 |
T |
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| Q |
221 |
ttttttgtcgtagacggattgacaaat |
247 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13875645 |
ttttttgtcgtagacggattgacaaat |
13875671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 14015570 - 14015796
Alignment:
| Q |
21 |
gactgaaagtagaagtgggtcgactactccttacaggactacaagtaggccttcctccggaccactcgccgggactttgacgccgccgacgattggtgcg |
120 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
14015570 |
gactgaaagtagaagtgggtccactactccttacaggactacaagtaggccttcctccggaccactcgccgggactttgacgccgccggcgattgatgcg |
14015669 |
T |
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| Q |
121 |
gtggatataccttacttgagtttaagggagctgactatggagcaacaacaacaacagaggatgtctacctcggctatgcctatttactttgttacttgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14015670 |
gtggatataccttacttgagtttaagggagctgactatggagcagcaacaacaacagaggatgtctacctcggctatgcctatttactttgttacttgaa |
14015769 |
T |
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| Q |
221 |
ttttttgtcgtagacggattgacaaat |
247 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14015770 |
ttttttgtcgtagacggattgacaaat |
14015796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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