View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_18 (Length: 256)
Name: NF12594_low_18
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36526551 - 36526785
Alignment:
| Q |
1 |
ttcttgccagttgccaccaacaagactgtatcaacaaacagtgaacgatgtaaacgtatggaactctgacatgttcgcaaggttgcataattgtatcgag |
100 |
Q |
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| T |
36526551 |
ttcttgccagttgccaccaacaagtctgtatcaacaaacagtgaacgatgtaaacgtatggaactctgacatgttcgcatggtcgcataattgtatcgag |
36526650 |
T |
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| Q |
101 |
ttaatcacatttggattctttgaatcatgtattagattag---------atgtgatctcaaaaaagatttaacaagtgagggacatatctcacttataaa |
191 |
Q |
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|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36526651 |
ttaatctcatttggattctttgaatcatgtattagatgagatgtgaatcatgtgatctcaaaaaagatttaacaagt--------tatctcacttataaa |
36526742 |
T |
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| Q |
192 |
ccatttttgtaaagttaacttcaacttaacttaaattctaaga |
234 |
Q |
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| T |
36526743 |
ccatttttgtaaagttaacttcaacttaacttaaattctaaga |
36526785 |
T |
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