View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_2 (Length: 588)
Name: NF12594_low_2
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 36 - 571
Target Start/End: Original strand, 11713635 - 11714164
Alignment:
| Q |
36 |
atcacttgtttagaagataaaaaactatttgtgtgggacttcaacttttcaaatactaccaggactcaattaataaaacccttcccacataattcaaatt |
135 |
Q |
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| T |
11713635 |
atcacttgtttaaaagataaaaaactatttgtgtgggactttaaattttcaaatactaccaggactcaattaataaaacccttcccacataattcaattt |
11713734 |
T |
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| Q |
136 |
ttaaaacataaataaagaagaatgaagttgccaactctgttctttattgatgtagcaatctaaatttacaaaatgtagttaaaggattctttacttaacn |
235 |
Q |
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| T |
11713735 |
ttaaaacataaataaagaagaatgaagttgccaactctgttctttattgatgtagcaatctaaatttacaaaatgtagttaaaggattctttacttaaca |
11713834 |
T |
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| Q |
236 |
nnnnnnnttctcttccaattaaannnnnnnncaattacactttaacatgcttcatttgttccagtaagactaattattaattaaaatgacatgcatgttt |
335 |
Q |
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| T |
11713835 |
aaaaaaatactcttccaattaagaaatttttcaattacactttaacatgcttcatttgttccagtaagactgattattaattaaaatgacatgcatgttt |
11713934 |
T |
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| Q |
336 |
gcttgagtgtatgtannnnnnnnnnnnnnnnaactatatctacatctacaacaaatgccactataactctttattcattgcccttgtcttcacttgccct |
435 |
Q |
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| T |
11713935 |
gcttgagtgtatgt------gtgtgtgtgtgaactatatctacatctacaacaaatgccactataactctttattcattgcccttgtcttcacttgccct |
11714028 |
T |
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| Q |
436 |
attaaattctccttttcctgtagaaattgatgaagagtttgagttgtataaggagaaggcattgtgcatggaggagtatcacttggtgaaatcaccatgc |
535 |
Q |
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| T |
11714029 |
attaaattctccttttcctgtagaaattgatgaagagtttgagttgtataaggagaaggcattgtgcatggaggagtatcacttggtgaaatcaccatgc |
11714128 |
T |
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| Q |
536 |
cctcaaccatgaaatgtttccttgcaccacgcaaag |
571 |
Q |
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| T |
11714129 |
cctcaaccatgaaatgtttccttgcaccacgcaaag |
11714164 |
T |
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