View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_20 (Length: 251)
Name: NF12594_low_20
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 14984039 - 14984267
Alignment:
| Q |
15 |
ttctccaaataaaaaattattttccatgtgtgataaaaataatccttggaactttgtttaatttcttctaatcaaaattaactttgtgaggggatatgaa |
114 |
Q |
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| T |
14984039 |
ttctccaaataaaaaaatattttccgtgtgtgataaaaataatccttggaactttgtttaatttcttctaatcaaaattaactttgtgaggggatatgaa |
14984138 |
T |
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| Q |
115 |
tatgaggataatttggtggctgaagagtggaaataaaaagtggagtgatacctttnnnnnnntaagaagtggagtgataaaaacatgttttagaaaaact |
214 |
Q |
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| T |
14984139 |
tatgaggataatttggtggctggagagtggaaataaaaagtggagtgatacctttaaaaaaataagaagtggagtgat-aaaacatgttttagaaaaact |
14984237 |
T |
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| Q |
215 |
ttcaagacttgcgtaaattttcttcatctc |
244 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14984238 |
ttcaagacttgcgtaaattttcttcatctc |
14984267 |
T |
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