View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12594_low_24 (Length: 229)

Name: NF12594_low_24
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12594_low_24
NF12594_low_24
[»] chr6 (32 HSPs)
chr6 (21-219)||(27590614-27590812)
chr6 (21-219)||(27703848-27704046)
chr6 (21-219)||(26804847-26805045)
chr6 (21-219)||(28788716-28788914)
chr6 (21-219)||(27716131-27716329)
chr6 (21-151)||(28794740-28794870)
chr6 (21-219)||(27608751-27608949)
chr6 (21-151)||(27675279-27675409)
chr6 (22-219)||(31286908-31287105)
chr6 (32-219)||(26648824-26649011)
chr6 (32-219)||(26754792-26754979)
chr6 (42-219)||(25076203-25076380)
chr6 (111-219)||(26864029-26864137)
chr6 (35-219)||(26826168-26826352)
chr6 (107-219)||(26851086-26851198)
chr6 (107-219)||(27425227-27425339)
chr6 (94-152)||(25547372-25547430)
chr6 (107-152)||(27528973-27529018)
chr6 (84-152)||(26952171-26952239)
chr6 (107-167)||(27602406-27602466)
chr6 (107-219)||(27662847-27662959)
chr6 (94-152)||(26145401-26145459)
chr6 (107-219)||(25513292-25513404)
chr6 (101-152)||(26058318-26058369)
chr6 (101-152)||(26078288-26078339)
chr6 (180-219)||(27675208-27675247)
chr6 (21-152)||(27681315-27681446)
chr6 (102-152)||(25582119-25582169)
chr6 (176-219)||(28794895-28794938)
chr6 (42-95)||(27696346-27696399)
chr6 (93-149)||(26886509-26886565)
chr6 (108-152)||(26961529-26961573)
[»] scaffold0277 (2 HSPs)
scaffold0277 (21-219)||(11285-11483)
scaffold0277 (21-219)||(2322-2520)
[»] scaffold0349 (1 HSPs)
scaffold0349 (21-219)||(15616-15814)
[»] scaffold0419 (1 HSPs)
scaffold0419 (21-219)||(9866-10064)
[»] chr8 (2 HSPs)
chr8 (21-167)||(29271522-29271668)
chr8 (116-215)||(22023703-22023802)
[»] scaffold1870 (1 HSPs)
scaffold1870 (21-151)||(1147-1277)
[»] chr1 (4 HSPs)
chr1 (107-216)||(265965-266074)
chr1 (102-219)||(28125324-28125441)
chr1 (107-219)||(26138351-26138463)
chr1 (102-219)||(28130355-28130472)
[»] chr2 (1 HSPs)
chr2 (114-216)||(17990853-17990955)
[»] scaffold0003 (1 HSPs)
scaffold0003 (107-219)||(62024-62136)
[»] chr4 (6 HSPs)
chr4 (107-219)||(18076216-18076328)
chr4 (84-150)||(18677296-18677362)
chr4 (84-150)||(18721810-18721876)
chr4 (77-150)||(18729232-18729305)
chr4 (94-150)||(18687351-18687407)
chr4 (94-150)||(18697139-18697195)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 27590812 - 27590614
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||   |||||||| ||||    
T  27590812 ttaagtgcatttggttgcaggacgctcaaacgttttccacctttagggttggcatctcttaaagaattgaagctttcttgttgttatagtctcaaaagtt 27590713  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||   | ||| ||| |||||||| |||||||||||||||||||||||||||    
T  27590712 ttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttcaaaatctcagtgaac 27590614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 27704046 - 27703848
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||| |||| |||||||||||||||||||  || ||||| ||||||| | ||||    
T  27704046 ttaagtgcatttggttgcagggagttcaaacgttttccacctttagggttagcatctcttaaagaattgaatctccgttattgtgagagtctcgatagtt 27703947  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||  |   | ||| ||||||||| || ||| |||||||||||||||||||||||    
T  27703946 ttccagaattattatgcaagatgacaaatatagataatatttggttgcagcatacttctataggagaactgccattttcatttcaaaatctcagtgaac 27703848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 26804847 - 26805045
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||  |||||||||||||    
T  26804847 ttaagtgcatttggttgcagcaagcttgaacgttttccacctttaggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagtt 26804946  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||||||||||||||| |||||||||| ||||||  ||||||||||      | | | ||||||||||||  |||||||||||||||||| |||||||    
T  26804947 ttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatactcccataggagaattgctatcttcatttcaaaatctgagtgaac 26805045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 28788716 - 28788914
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||| |||||||  |||||| || ||| || ||||||||||||||||||||||||  ||||| |||||||||||||||  ||||| ||||||||||||||    
T  28788716 ttaaatgcatttgattgcagcaaactcgaaagttttccacctttagggttggcatcccttaatgaattgaatctctctcattgtgggagtctcaagagtt 28788815  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||||||||||||||||||||||||||  | || |||||||||  |   | ||| ||| |||||||| |||||||||||||||||||||||||||    
T  28788816 ttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaaaatctcagtgaac 28788914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 27716329 - 27716131
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||| | ||||||  ||| || ||| ||||||||||||||| ||||||| |||||| ||||||||||||  || |||   ||||||||||||||    
T  27716329 ttaagtgcatatggttgcaataaggtcgaacattttccacctttaggtttggcatctcttaaggaattgaatctcagttcttgcaggagtctcaagagtt 27716230  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    | ||| ||||||||| || ||| ||||||||||||||| |||||||    
T  27716229 ttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaaaatcttagtgaac 27716131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 28794740 - 28794870
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||| | ||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||| ||||||||||| ||    
T  28794740 ttaagtgcatatggttgcagcaagctcgaacgttttccacctttagggttggcatctcttaacgaattggatctctctttttgtgagagtctcaagaatt 28794839  T
Q  121 ttccaaaattattatgcaagatgacaaatat 151  Q
    |||||||||||||||||||||||||||||||    
T  28794840 ttccaaaattattatgcaagatgacaaatat 28794870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 27608949 - 27608751
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||| | ||||||| |||||| ||||||||||||||||||| ||||||| ||||||  |||||||||||  | |||||| ||||||| | ||||    
T  27608949 ttaagtgcatatggttgcagaaagctcgaacgttttccacctttaggtttggcatctcttaagaaattgaatctcagtggttgtgagagtctcgatagtt 27608850  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||| |||||||||||||||||||||| ||||||||||||| ||||    | | ||| ||| ||||| || ||| |||||||||||||||||||||||    
T  27608849 ttccagaattattatgcaagatgacaaagatagacaatattttgttgattagtacttccataagagaactgccattttcatttcaaaatctcagtgaac 27608751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 27675409 - 27675279
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||| || || ||| |||||||  ||||||||||||||    
T  27675409 ttaagtgcatttggttgcagaaagctcaaacgttttccacctttagggttggcatctcttaaggaactggatatctgttgttgttcgagtctcaagagtt 27675310  T
Q  121 ttccaaaattattatgcaagatgacaaatat 151  Q
    ||||| |||||||||||||||||||||||||    
T  27675309 ttccagaattattatgcaagatgacaaatat 27675279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 31286908 - 31287105
Alignment:
Q  22 taagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagttt 121  Q
    |||||||| || ||||||| |||||||| ||||||||||| ||||| ||||||| |||||| |||||| | ||||||| ||||||||||||||| |||||    
T  31286908 taagtgcaattggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgtgagtctcaatagttt 31287007  T
Q  122 tccaaaattattatgcaagatgacaaatatagacaatatttggttgtgggga-agttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||| |||||||||||||||||||||||||| |   ||||| ||| ||   | | ||| |||||||||||| |||||||||||||||||||||||||||    
T  31287008 tccagaattattatgcaagatgacaaatataaaacgtattttgtt-tgttaatacttccataggagaattgccatcttcatttcaaaatctcagtgaac 31287105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 26648824 - 26649011
Alignment:
Q  32 ttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagttttccaaaatta 131  Q
    ||||||||| |||||||| ||||||||||| ||||||||| ||| ||||||  ||||| | |||  | |||||| |||||| |||| ||||||| |||||    
T  26648824 ttgttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaactcagtggttgtgagagtctaaagaattttccagaatta 26648923  T
Q  132 ttatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||| |||| ||||||| |  ||||||  ||||   ||| ||| |||||||||||| ||||||||||||| |||||||||||||    
T  26648924 ttatgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttcataatctcagtgaac 26649011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 26754792 - 26754979
Alignment:
Q  32 ttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagttttccaaaatta 131  Q
    ||||||||| |||||||| ||||||||||| ||||||||| ||| ||||||  ||||| | |||  | |||||| |||||| |||| ||||||| |||||    
T  26754792 ttgttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaactcagtggttgtgagagtctaaagaattttccagaatta 26754891  T
Q  132 ttatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||| |||| ||||||| |  ||||||  ||||   ||| ||| |||||||||||| ||||||||||||| |||||||||||||    
T  26754892 ttatgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttcataatctcagtgaac 26754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 25076203 - 25076380
Alignment:
Q  42 aagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagttttccaaaattattatgcaaga 141  Q
    ||||||||| |||||||||| ||| || || | | |||||| |||||||| || |||   |||  ||||||||||||||||||| ||||||| |||||||    
T  25076203 aagctcaaaagttttccacccttacggctgccctctcttaaggaattgaaactttctgagtgttggagtctcaagagttttccagaattattgtgcaaga 25076302  T
Q  142 tgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||| |  | | ||||| ||||   || | ||| |||||||||||| ||| |||||||||||||||||||||||    
T  25076303 tgacaaatttgaaaagtattttgttggacggtacttccataggagaattgccattttcatttcaaaatctcagtgaac 25076380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 26864029 - 26864137
Alignment:
Q  111 ctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatc 210  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |  | ||  ||||||  | || ||| ||| |||||||||||| ||||||||||||||    
T  26864029 ctcaagagttttccagaattattatgcaagatgataaatataaaagagatccggttgtctgaaacttccataagagaattgtcattttcatttcaaaatc 26864128  T
Q  211 tcagtgaac 219  Q
    |||||||||    
T  26864129 tcagtgaac 26864137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 26826168 - 26826352
Alignment:
Q  35 ttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagttttccaaaattatta 134  Q
    |||||| |||||| |  |||||||||| ||| ||||| | |  ||||| || ||||| |||||| | |||  ||||||||||||||||||||||||||||    
T  26826168 ttgcagcaagctcgagagttttccacccttacggttgccctcccttaaggatttgaaactctctggctgtaagagtctcaagagttttccaaaattatta 26826267  T
Q  135 tgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||  |||||||||| ||| |    ||||| ||||  |  | ||| |||||||||||| |||||||||||| |||||||| |||||    
T  26826268 tgtgagatgacaaaaataaaaggaatttgtttgtatgatacttccataggagaattgccatcttcatttcgaaatctcaatgaac 26826352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 26851086 - 26851198
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||  | |||  |||     | | ||| |||||||||||| ||||||||||| ||    
T  26851086 gagtctcaagaattttccagaattattatgcaagatgacaaatatagaagagattgagttacatcgtacttccataggagaattgccatcttcatttaaa 26851185  T
Q  207 aatctcagtgaac 219  Q
    |||||||||||||    
T  26851186 aatctcagtgaac 26851198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 27425339 - 27425227
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |   ||| | ||||  || || ||| |||||||||||  ||| ||| ||||||    
T  27425339 gagtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaa 27425240  T
Q  207 aatctcagtgaac 219  Q
    ||||| |||||||    
T  27425239 aatcttagtgaac 27425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 25547372 - 25547430
Alignment:
Q  94 tctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  25547372 tctcttattgtgagagtctcaagaattttccagaattattatgcaagatgacaaatata 25547430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 27529018 - 27528973
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27529018 gagtctcaagagttttccagaattattatgcaagatgacaaatata 27528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 26952171 - 26952239
Alignment:
Q  84 gaattgaatctctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    |||||||| ||||||   |||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  26952171 gaattgaaactctctgagtgtgagagtctcaagagctttccagaattattatgcaagatgacaaatata 26952239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 27602466 - 27602406
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttg 167  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || |  |||||||||||    
T  27602466 gagtctcaagagttttccagaattattatgcaagatgacaaatttaaaagatatttggttg 27602406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 27662959 - 27662847
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |  | |||||||| || |  | ||| |||| |||| || ||| ||||||| ||    
T  27662959 gagtctcaagagttttccagaattattatgcaagatgtcaaatataaaagagatttggttatgtgatacttccatagaagaaatgccattttcatttaaa 27662860  T
Q  207 aatctcagtgaac 219  Q
    ||||||| |||||    
T  27662859 aatctcaatgaac 27662847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 26145401 - 26145459
Alignment:
Q  94 tctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||| |||||||||||||||    
T  26145401 tctctggttgtgagagtctcaagaattttccagaattattatgtaagatgacaaatata 26145459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 25513292 - 25513404
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||| |  |||||  | | |  |  | ||| |||| ||||||| ||||||||||||||    
T  25513292 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatcttcatttcaa 25513391  T
Q  207 aatctcagtgaac 219  Q
    ||| |||||||||    
T  25513392 aatttcagtgaac 25513404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 26058318 - 26058369
Alignment:
Q  101 ttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||||||||||||    
T  26058318 ttgtgtgagtctcaagaattttccagaattattatgtgagatgacaaatata 26058369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 26078288 - 26078339
Alignment:
Q  101 ttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||||||||||||    
T  26078288 ttgtgtgagtctcaagaattttccagaattattatgtgagatgacaaatata 26078339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 27675247 - 27675208
Alignment:
Q  180 ataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  27675247 ataggagaattgccatcttcatttcaaaatctcagtgaac 27675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 27681315 - 27681446
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||| | ||||||| |||||| ||| ||||| ||||||||||||||||| ||||||  ||||||  |||| |   |||| | ||||  | | ||    
T  27681315 ttaagtgcatatggttgcagaaagctcgaacattttcgacctttagggttggcatctcttaagaaattgatactctatgagtgtgagtgtcttgataatt 27681414  T
Q  121 ttccaaaattattatgcaagatgacaaatata 152  Q
    ||||| ||||||||||||||||| || |||||    
T  27681415 ttccagaattattatgcaagatggcacatata 27681446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 25582119 - 25582169
Alignment:
Q  102 tgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    |||| ||||||||||| ||||||| |||||||||||||||||| |||||||    
T  25582119 tgtgagagtctcaagaattttccagaattattatgcaagatgagaaatata 25582169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 28794895 - 28794938
Alignment:
Q  176 ttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||| |||||||||||| ||||||||||||||||||||| |||||    
T  28794895 ttccataggagaattgccatcttcatttcaaaatctcaatgaac 28794938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 27696399 - 27696346
Alignment:
Q  42 aagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctc 95  Q
    |||||||||| ||||||||||||||| ||||||| |||||| ||| | ||||||    
T  27696399 aagctcaaacattttccacctttaggtttggcatctcttaaggaacttaatctc 27696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 26886509 - 26886565
Alignment:
Q  93 ctctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaat 149  Q
    ||||||| ||||  |||||||||||  || ||| |||||||||||||||||||||||    
T  26886509 ctctcttattgtaggagtctcaagaaattcccagaattattatgcaagatgacaaat 26886565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 26961529 - 26961573
Alignment:
Q  108 agtctcaagagttttccaaaattattatgcaagatgacaaatata 152  Q
    |||||||| ||||||||| ||||||||||| | ||||||||||||    
T  26961529 agtctcaaaagttttccagaattattatgccaaatgacaaatata 26961573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 11483 - 11285
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||| |||||||  |||||| || ||| || ||||||||||||||||||||||||  ||||| |||||||||||||||  ||||| ||||||||||||||    
T  11483 ttaaatgcatttgattgcagcaaactcgaaagttttccacctttagggttggcatcccttaatgaattgaatctctctcattgtgggagtctcaagagtt 11384  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||||||||||||||||||||||||||  | || |||||||||  |   | ||| ||| |||||||| |||||||||||||||||||||||||||    
T  11383 ttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaaaatctcagtgaac 11285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 2520 - 2322
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||  | ||||||| || ||| |||||||||||||||||||| | ||||  ||||| ||||||||| |||||| ||||| ||||||||||||||    
T  2520 ttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggcttgcatcccttaatgaattgaatatctcttattgtgagagtctcaagagtt 2421  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaat-atttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||  |  || ||| ||| |||||||| ||||||||||||||||||||| |||||    
T  2420 ttccaaaattattatgcaagatgacaaatat-gaaaatgatttggttgcagaaaacttccataagagaattgccatcttcatttcaaaatctcaatgaac 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 15616 - 15814
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||| | ||||||  ||| || ||| ||||||||||||||| ||||||| |||||| ||||||||||||  || |||   ||||||||||||||    
T  15616 ttaagtgcatatggttgcaataaggtcgaacattttccacctttaggtttggcatctcttaaggaattgaatctcagttcttgcaggagtctcaagagtt 15715  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    | ||| ||||||||| || ||| ||||||||||||||| |||||||    
T  15716 ttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaaaatcttagtgaac 15814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 9866 - 10064
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||  | ||||||| || ||| |||||||||||||||||||| | ||||  ||||| ||||||||| |||||| ||||| ||||||||||||||    
T  9866 ttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggcttgcatcccttaatgaattgaatatctcttattgtgagagtctcaagagtt 9965  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagtgaac 219  Q
    |||||||||||||||||||||||||||||||  | |  |||||||||  |  || ||| ||| |||||||| ||||||||||||||||||||| |||||    
T  9966 ttccaaaattattatgcaagatgacaaatatgaaaacgatttggttgcagaaaacttccataagagaattgccatcttcatttcaaaatctcaatgaac 10064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 29271668 - 29271522
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||| |  |||||  |||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||  | |||||||||||||| | ||||    
T  29271668 ttaagtgcatatgcttgcaaaaagctcaaacattttccacctttaggtttggcatctcttaaggaattgaatctcagtggttgtgtgagtctcgatagtt 29271569  T
Q  121 ttccaaaattattatgcaagatgacaaatatagacaatatttggttg 167  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  29271568 ttccagaattattatgcaagatgaaaaatatagacaatattttgttg 29271522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 22023703 - 22023802
Alignment:
Q  116 gagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctcagt 215  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||| |||||     | ||| ||| |||||||| ||||||| |||||||||||||||    
T  22023703 gagttttccaaaattattatgcaagatgaaaaatatagaatatatttcgttgtataatacttccataagagaattgccatcttcttttcaaaatctcagt 22023802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 1147 - 1277
Alignment:
Q  21 ttaagtgcattttgttgcaggaagctcaaacgttttccacctttagggttggcatttcttaaagaattgaatctctcttgttgtgtgagtctcaagagtt 120  Q
    |||||||||  | ||||||| || ||| |||||||||||||||||||| | ||||  ||||| ||||||||| |||||| ||||| ||||||||||||||    
T  1147 ttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggcttgcatcccttaatgaattgaatatctcttattgtgagagtctcaagagtt 1246  T
Q  121 ttccaaaattattatgcaagatgacaaatat 151  Q
    |||||||||||||||||||||||||||||||    
T  1247 ttccaaaattattatgcaagatgacaaatat 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 266074 - 265965
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||  | || ||| ||| |||||||| ||||||||||||||    
T  266074 gagtctcaatagctttccaaaattattatgcaagatgacaaatatagaaaatattttgttgtatgaaacttccataagagaattgccatcttcatttcaa 265975  T
Q  207 aatctcagtg 216  Q
    ||||||||||    
T  265974 aatctcagtg 265965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 28125441 - 28125324
Alignment:
Q  102 tgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcat 201  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||||||||||  | ||||||||| | |||| ||| ||| |||||||  ||| |||||    
T  28125441 tgtgagagtctcaagagttttccagaattattaggcaagatgacaaatatagaagagatttggttgcgtggaacttccataagagaattaccattttcat 28125342  T
Q  202 ttcaaaatctcagtgaac 219  Q
    ||||||||||||||||||    
T  28125341 ttcaaaatctcagtgaac 28125324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 26138351 - 26138463
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||||||||||| ||||| |  | | | ||||||||||| |  | ||||||||||  ||||  || |||||||||||| ||| ||||||||||    
T  26138351 gagtctcaagagttttccagaattagttggtaggttgacaaatataaaagacatttggttgtatggaacctccataggagaattgccattttcatttcaa 26138450  T
Q  207 aatctcagtgaac 219  Q
    ||| |||||||||    
T  26138451 aatttcagtgaac 26138463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 28130472 - 28130355
Alignment:
Q  102 tgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcat 201  Q
    |||| ||||||||| |  |||||| |||||||| ||||| ||||||||||| |  | ||| ||||| | | || ||| ||| |||||||  ||| |||||    
T  28130472 tgtgagagtctcaaaaaatttccagaattattaggcaagttgacaaatatacaagagattaggttgagtgaaacttccataagagaattaccattttcat 28130373  T
Q  202 ttcaaaatctcagtgaac 219  Q
    |||||||||| |||||||    
T  28130372 ttcaaaatctaagtgaac 28130355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 17990955 - 17990853
Alignment:
Q  114 aagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaaaatctca 213  Q
    |||||||||||| |||||||||||||||||||||| |||||  |||||||||||   |  ||||| |||||||||||| ||| |||||||||||||||||    
T  17990955 aagagttttccagaattattatgcaagatgacaaagatagaacatatttggttggcagatagttccataggagaattgccattttcatttcaaaatctca 17990856  T
Q  214 gtg 216  Q
    |||    
T  17990855 gtg 17990853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 62024 - 62136
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |   ||| | ||||  || || ||| |||||||||||  ||| ||| ||||||    
T  62024 gagtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaa 62123  T
Q  207 aatctcagtgaac 219  Q
    ||||| |||||||    
T  62124 aatcttagtgaac 62136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 18076216 - 18076328
Alignment:
Q  107 gagtctcaagagttttccaaaattattatgcaagatgacaaatatagacaatatttggttgtggggaagttcgataggagaattgtcatcttcatttcaa 206  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |   ||| | ||||  || || ||| |||||||||||  ||| ||| ||||||    
T  18076216 gagtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaa 18076315  T
Q  207 aatctcagtgaac 219  Q
    ||||| |||||||    
T  18076316 aatcttagtgaac 18076328  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 18677362 - 18677296
Alignment:
Q  84 gaattgaatctctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaata 150  Q
    |||||| | ||||||| ||||  ||| ||||||||||||||| |||||||||| |||||||||||||    
T  18677362 gaattggacctctctttttgtaagagactcaagagttttccagaattattatgtaagatgacaaata 18677296  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 18721876 - 18721810
Alignment:
Q  84 gaattgaatctctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaata 150  Q
    |||||| | ||||||| ||||| ||| ||||||||||||||| || ||||||| |||||||||||||    
T  18721876 gaattggacctctctttttgtgagagactcaagagttttccagaactattatgtaagatgacaaata 18721810  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 18729305 - 18729232
Alignment:
Q  77 tcttaaagaattgaatctctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaata 150  Q
    |||||| |||||| | ||| ||| ||||  ||| ||||||||||||||| |||||||||| |||||||||||||    
T  18729305 tcttaaggaattggacctcacttattgtaagagactcaagagttttccagaattattatgtaagatgacaaata 18729232  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 18687407 - 18687351
Alignment:
Q  94 tctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaata 150  Q
    |||||| ||||  ||| ||||||||||||||| |||||||||| |||||||||||||    
T  18687407 tctcttattgtaggagactcaagagttttccagaattattatgtaagatgacaaata 18687351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 18697195 - 18697139
Alignment:
Q  94 tctcttgttgtgtgagtctcaagagttttccaaaattattatgcaagatgacaaata 150  Q
    |||||| ||||  ||| ||||||||||||||| |||||||||| |||||||||||||    
T  18697195 tctcttattgtaggagactcaagagttttccagaattattatgtaagatgacaaata 18697139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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