View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_25 (Length: 222)
Name: NF12594_low_25
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 13767325 - 13767140
Alignment:
| Q |
17 |
actgttgtccagatccagatcttaaaagggaccaggtctttgctgctatcctcctaagtgcgctttttgcattactttctcctggtcagtgcttccaagt |
116 |
Q |
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| T |
13767325 |
actgttgtccagatccagatcttaaaagggaccaggtcttcgctcctatcctcctaagtgcgctttttgcattactttttcctggtcagtgcttccaagt |
13767226 |
T |
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| Q |
117 |
ctcttctctgttattttatgtttatggttccctcgtcttgtttgaagtcaatcccaatttcccctctttctgttgatttgttgtgt |
202 |
Q |
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| T |
13767225 |
ctcttctctgttattttatgtttatggttcccttgtcttgtttgaagtcaatcccaatttctcctctttctgttgatttgttgtgt |
13767140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 13753922 - 13753737
Alignment:
| Q |
17 |
actgttgtccagatccagatcttaaaagggaccaggtctttgctgctatcctcctaagtgcgctttttgcattactttctcctggtcagtgcttccaagt |
116 |
Q |
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| T |
13753922 |
actgttgtccagatccagatcttaaaatggaccaggtcttcgctcctatcctcctaagtgcgctttttgcattactttttcctggtcagtgcttccaagt |
13753823 |
T |
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| Q |
117 |
ctcttctctgttattttatgtttatggttccctcgtcttgtttgaagtcaatcccaatttcccctctttctgttgatttgttgtgt |
202 |
Q |
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| T |
13753822 |
ctcttctctgttattttatgtttatggttcccttgtcttgtttgaagtcaatcccaatttctcctctttctgttgatttgttgtgt |
13753737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 23444301 - 23444350
Alignment:
| Q |
100 |
ggtcagtgcttccaagtctcttctctgttattttatgtttatggttccct |
149 |
Q |
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| T |
23444301 |
ggtcagtgcttccaagtctcttctctattattatatgcttacggtcccct |
23444350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 8715964 - 8715915
Alignment:
| Q |
100 |
ggtcagtgcttccaagtctcttctctgttattttatgtttatggttccct |
149 |
Q |
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| T |
8715964 |
ggtcagtgcttccaagtctcttctctattattatatgcttacggtcccct |
8715915 |
T |
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