View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12594_low_3 (Length: 559)
Name: NF12594_low_3
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 542
Target Start/End: Original strand, 31692105 - 31692630
Alignment:
| Q |
17 |
gagatgaaagtgtgaaactattggaaggaagtttaagaaaaggtgacgaatcaggagactctaccgagttacaaactgtaaaggaggaacttgaggccgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31692105 |
gagatgaaagtgtgaaactattggaaggaagtttaagaaaaggtgacgaatcaggagactctaccgagttacaaactgtaaaggaggaacttgaggccgc |
31692204 |
T |
|
| Q |
117 |
aataaaagaattagctttgattagagatgaaggttttcagtttatggcttctatggatgttataagaaatgagttgaagcatgtaactaaggaaatagct |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31692205 |
aacgaaagaattagctttgattagagatgaaggttttcagtttatggcttctatggatgttataagaaatgagctgaagcatgtaactaaggaaatagct |
31692304 |
T |
|
| Q |
217 |
cgcttgaagaaaaacgattcatcggttcaaaatctcaattcaaaggttctaagaacaaaatctaagctagaagctgcatccgctgcagaggaaaaagcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31692305 |
cgcttgaagaaaaacgattcatcggttcaaaatctcaattcaaaggttctaagaacaaaatctaagctagaagctgcatctgctgcagaggaaaaagcaa |
31692404 |
T |
|
| Q |
317 |
gatcattagtagttagtctatctcattctcttgagactctgaagaaagaaacagatgaagctaaaacggaaaaagagctcatatctcaagatattataac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31692405 |
gatcattagtagttagtctatctcattctcttgagactctgaagaaagaaacagatgaagctaaaacggaaaaagagctcatatctcaagatattataac |
31692504 |
T |
|
| Q |
417 |
aactaagttggaaattgaaaaaaccgattttgagattgatacgagtgaggaaaaattgcaaggcattatgaaagagttggaagaagcaaaaacaactgaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31692505 |
aactaagttggaaattgaaaaaaccgagtttgagattgatacgagtgaggaaaaattgcaaggcgttatgaaagagttggaagaagcaaaaacaactgaa |
31692604 |
T |
|
| Q |
517 |
ggtttagctttggagaagctgaaaac |
542 |
Q |
| |
|
| |||||||||||||||||| ||||| |
|
|
| T |
31692605 |
gctttagctttggagaagcttaaaac |
31692630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University