View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12594_low_4 (Length: 545)
Name: NF12594_low_4
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_4 |
 |  |
|
| [»] scaffold0031 (1 HSPs) |
 |  |  |
|
| [»] scaffold0490 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 7432917 - 7433424
Alignment:
| Q |
18 |
attattagattagattataggtttctttttaagtggatagttggcctctcagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7432917 |
attattagattagattataggtttctttttaagtggatagttggcctctcagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttac |
7433016 |
T |
 |
| Q |
118 |
gtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaattacaaaatatatgtgaagctttttaatttgattaattgcactccct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7433017 |
gtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaatgacaaaatatatgtgaagctttttaatttgattaattgcactccct |
7433116 |
T |
 |
| Q |
218 |
ctattttaactcgacttttattgataaagaattctctttttcatatgaacataatatctatgcacataggagatatattagattgatatggacaaccctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
7433117 |
ctattttaactcgacttttattgataaagaattctctttttcatatgaacataatatctatgcacataggagatatattagattgatatggattacccgt |
7433216 |
T |
 |
| Q |
318 |
tgaactttatgtagaagtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctc |
417 |
Q |
| |
|
| ||||||| |||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7433217 |
tcaactttacgtagaaatcaacaacctctggtgctatgaagttaagtgtgtcaaatgcaaatggtataaaaatacgttgattttatgaacacattttctc |
7433316 |
T |
 |
| Q |
418 |
atatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaacccaatcaagcgta |
517 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7433317 |
atatttgatcactttgcttgacgcgactttgaagacttcctgtcccactgtaaaagccttgatccataatcgcacaagtggtgaaacccaatcaagcgta |
7433416 |
T |
 |
| Q |
518 |
cacatgca |
525 |
Q |
| |
|
|||||||| |
|
|
| T |
7433417 |
cacatgca |
7433424 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 532
Target Start/End: Original strand, 34644540 - 34644775
Alignment:
| Q |
299 |
attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga |
397 |
Q |
| |
|
||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| |||| | || ||||| |||||||||||||| || || | |
|
|
| T |
34644540 |
attgatatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtagg |
34644639 |
T |
 |
| Q |
398 |
ttttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtg |
497 |
Q |
| |
|
|| | |||||| |||||||| ||||| ||||||||||||||| ||||| ||| | | ||| | || ||||||||| || || ||| | |||||||| |
|
|
| T |
34644640 |
ttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtg |
34644739 |
T |
 |
| Q |
498 |
gtgaaa-cccaatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||| |
|
|
| T |
34644740 |
gtgaaaccccagtcaagtccacacatgcatgttttc |
34644775 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 28041190 - 28041116
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcg |
442 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| | ||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
28041190 |
tcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcg |
28041116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 454
Target Start/End: Original strand, 2764465 - 2764609
Alignment:
| Q |
311 |
aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac |
409 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||| ||||| |||| | | || ||||| | |||||| |||||| || ||||||| | |||||| |
|
|
| T |
2764465 |
aaccctttggactttatgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacac |
2764564 |
T |
 |
| Q |
410 |
attttctcatatttggtcactttgtttgacgcgactttgaggact |
454 |
Q |
| |
|
||||||||| |||| |||||||| |||| | ||||| |||||| |
|
|
| T |
2764565 |
gttttctcatgtttgaccactttgtctgacacaacttttaggact |
2764609 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 25375890 - 25375817
Alignment:
| Q |
374 |
gcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||| |||| |||| ||||||||||||| ||||||| ||||| |
|
|
| T |
25375890 |
gcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaacttt |
25375817 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 532
Target Start/End: Complemental strand, 37932185 - 37932116
Alignment:
| Q |
464 |
actgtaaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
37932185 |
actgtaaaagccttggcccctaatcccacaagtggtgaaacctcaatcaagtccacgcatgcatgttttc |
37932116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 312 - 447
Target Start/End: Complemental strand, 37873758 - 37873622
Alignment:
| Q |
312 |
accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca |
410 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||||||||| |||| || || ||||| |||||||||||||||||| ||||||| | |||||| |
|
|
| T |
37873758 |
accctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacg |
37873659 |
T |
 |
| Q |
411 |
ttttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| ||||| |
|
|
| T |
37873658 |
ctttctcatgtttggccactttgcttgacgcaacttt |
37873622 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 299 - 438
Target Start/End: Complemental strand, 25663165 - 25663025
Alignment:
| Q |
299 |
attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga |
397 |
Q |
| |
|
||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| |||| | | || ||||| |||||||||||||||||| ||||| |
|
|
| T |
25663165 |
attgatatgcataaccctttggactctatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttga |
25663066 |
T |
 |
| Q |
398 |
ttttatgaacacattttctcatatttggtcactttgtttga |
438 |
Q |
| |
|
|| | |||||| |||||||| ||||| |||||||||||| |
|
|
| T |
25663065 |
ttatcagaacacgctttctcatgtttggccactttgtttga |
25663025 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 15292082 - 15292010
Alignment:
| Q |
375 |
caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||| ||||||||||| ||||||| | |||||| ||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
15292082 |
caaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttt |
15292010 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 32230560 - 32230491
Alignment:
| Q |
378 |
atggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
32230560 |
atggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaacttt |
32230491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 14423722 - 14423795
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| | |||||| |||||||| || |||||||||| ||||||| |
|
|
| T |
14423722 |
tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgc |
14423795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 532
Target Start/End: Complemental strand, 33692118 - 33691953
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactg |
467 |
Q |
| |
|
||||| |||||||||| |||| || ||||||| | ||||| |||| |||| ||||| ||||||| ||||||| |||| ||| || | ||| | || | |
|
|
| T |
33692118 |
tcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccg |
33692019 |
T |
 |
| Q |
468 |
taaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
|||||||| || || ||| | |||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
33692018 |
taaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttc |
33691953 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 294 - 532
Target Start/End: Original strand, 39434636 - 39434876
Alignment:
| Q |
294 |
attagattgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacac |
392 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||| |||||||||| |||| | |||| ||||| ||||| || || ||||| |||||||||||||| || |
|
|
| T |
39434636 |
attacattgatatgcataaccctttggactctatgtagaagatcaaatgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcat |
39434735 |
T |
 |
| Q |
393 |
gttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcac |
492 |
Q |
| |
|
||||||| | |||||| |||||||| ||||| ||||||| ||||||| ||||| || |||| ||| | ||||||||||||| | || ||| | ||| |
|
|
| T |
39434736 |
gttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactgtaaaagcctccacccctaaacccac |
39434835 |
T |
 |
| Q |
493 |
aagtggtgaaa-cccaatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
39434836 |
aagtggtgaaaccccagtcaagtacacacatgcatgttttc |
39434876 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 532
Target Start/End: Original strand, 24125019 - 24125237
Alignment:
| Q |
316 |
tttgaactttatgtagaagtc-aacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt |
414 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||| ||| | || | ||||| ||||||||||||||| || ||||||| | || ||| ||| |
|
|
| T |
24125019 |
tttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgcttt |
24125118 |
T |
 |
| Q |
415 |
ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag |
513 |
Q |
| |
|
||||| ||||| || |||| |||| || |||| ||| || | ||| |||| ||||||| | || ||||||| |||||||||||||| |||| ||||| |
|
|
| T |
24125119 |
ctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagtcaag |
24125218 |
T |
 |
| Q |
514 |
cgtacacatgcatgttttc |
532 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24125219 |
tctacacatgcatgttttc |
24125237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 532
Target Start/End: Complemental strand, 25021934 - 25021712
Alignment:
| Q |
312 |
accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca |
410 |
Q |
| |
|
|||||||||||||| ||| || | |||||||| |||||||||| |||| || | ||||| | |||||||||||||||| ||||||| | ||||||| |
|
|
| T |
25021934 |
accctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca |
25021835 |
T |
 |
| Q |
411 |
ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaac-ccaat |
509 |
Q |
| |
|
|||||||||||| ||||||| ||||| | ||||| ||| || |||| ||||||||| | | || || ||||| ||||||||||||||| || | |
|
|
| T |
25021834 |
ctttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaactccggt |
25021735 |
T |
 |
| Q |
510 |
caagcgtacacatgcatgttttc |
532 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
25021734 |
caagtccacacatgcatgttttc |
25021712 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 38815281 - 38815407
Alignment:
| Q |
312 |
accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca |
410 |
Q |
| |
|
|||||||||||| |||||||||| |||||| | |||||||||| |||| | || ||||| ||||||||||||||| || ||||||| | |||||| |
|
|
| T |
38815281 |
accctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacg |
38815380 |
T |
 |
| Q |
411 |
ttttctcatatttggtcactttgtttg |
437 |
Q |
| |
|
|||||||| ||||| ||||||||||| |
|
|
| T |
38815381 |
ctttctcatgtttggccactttgtttg |
38815407 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 532
Target Start/End: Original strand, 500279 - 500436
Alignment:
| Q |
376 |
aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc |
475 |
Q |
| |
|
||||||||||||| || ||||||| | |||||| ||||||||| ||||| ||||||| ||||||| ||||| ||| || || | || ||||||| | |
|
|
| T |
500279 |
aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccgtaaaaggc |
500378 |
T |
 |
| Q |
476 |
ttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
|| | ||||| |||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
500379 |
ccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttc |
500436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 506
Target Start/End: Complemental strand, 55933581 - 55933387
Alignment:
| Q |
311 |
aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac |
409 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||| ||||| ||||| | || ||||| ||||||||||||||| || ||||||| | ||||| |
|
|
| T |
55933581 |
aaccctttggactctatgtagaaggtcaacaac--ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaa |
55933484 |
T |
 |
| Q |
410 |
attttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc |
506 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| ||||| ||| || ||| | || ||||||||| ||| || ||| | |||||| |||||||||| |
|
|
| T |
55933483 |
actttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctaccgtaaaagccctgacccttaaacccacaaggggtgaaaccc |
55933387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 441
Target Start/End: Complemental strand, 34107812 - 34107684
Alignment:
| Q |
316 |
tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca--tt |
412 |
Q |
| |
|
|||||||| |||||||||| |||||| | |||||||||| ||| | | || ||||| ||||||||||||||||| ||||||| | |||||||| || |
|
|
| T |
34107812 |
tttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgattatctgaacacacgtt |
34107713 |
T |
 |
| Q |
413 |
ttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| |
|
|
| T |
34107712 |
ttctcatgtttggccacttcgtttgacgc |
34107684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 441
Target Start/End: Original strand, 53619572 - 53619703
Alignment:
| Q |
311 |
aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac |
409 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| | |||| ||||| ||||| || || ||||| |||||||||||||| || ||||||| | |||||| |
|
|
| T |
53619572 |
aaccctttagactctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac |
53619671 |
T |
 |
| Q |
410 |
attttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||| |
|
|
| T |
53619672 |
gttttctcatgtttggccactttgcttgacgc |
53619703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 600754 - 600684
Alignment:
| Q |
369 |
caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgac |
439 |
Q |
| |
|
|||| ||||||||||||||| || ||| ||| | |||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
600754 |
caaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgac |
600684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 41440145 - 41440068
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgact |
445 |
Q |
| |
|
||||||| |||| ||||||||||||||||| | | ||||||||||||| || |||| ||||||||||| |||||| |
|
|
| T |
41440145 |
tcaaatgtaaatagtataaaaacacgttgaatgttagaacacattttcttatgtttgactactttgtttgaagcgact |
41440068 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 4419249 - 4419297
Alignment:
| Q |
311 |
aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaag |
358 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
4419249 |
aaccctttgaactctatgtagaaggtcaacaacctctgatgctacgaag |
4419297 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 38535686 - 38535614
Alignment:
| Q |
315 |
ctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataa |
386 |
Q |
| |
|
||||||||| |||||||| | | |||||| |||||||||| ||||| || || ||||||||||||||||||| |
|
|
| T |
38535686 |
ctttgaactctatgtagagggtgaacaacctctggtgctaggaagtcaaaagtgtcaaatgcaaatggtataa |
38535614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 532
Target Start/End: Original strand, 49018015 - 49018172
Alignment:
| Q |
376 |
aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc |
475 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| |||||||| |||||||||||||||| ||| ||||| ||| | | ||| | || ||||||| | |
|
|
| T |
49018015 |
aaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtcctaccgtaaaaggc |
49018114 |
T |
 |
| Q |
476 |
ttgatccataatcgcacaagtggtgaaac-ccaatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
| || | |||| ||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
49018115 |
tcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttc |
49018172 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 439
Target Start/End: Complemental strand, 52741628 - 52741504
Alignment:
| Q |
316 |
tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt |
414 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||| ||| || || ||||| ||||||||||||||| || ||||||| | |||||| ||| |
|
|
| T |
52741628 |
tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt |
52741529 |
T |
 |
| Q |
415 |
ctcatatttggtcactttgtttgac |
439 |
Q |
| |
|
||||| |||||||| |||||||||| |
|
|
| T |
52741528 |
ctcatgtttggtcaatttgtttgac |
52741504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 532
Target Start/End: Original strand, 13582560 - 13582718
Alignment:
| Q |
375 |
caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc |
474 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||| || |||| |||||||| ||||||| |||| ||| || | ||| | || ||||||| |
|
|
| T |
13582560 |
caaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggtaaaagg |
13582659 |
T |
 |
| Q |
475 |
cttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
| ||| | ||||| |||||||| ||||||| | ||||| ||||||||||||||||| |
|
|
| T |
13582660 |
cctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttc |
13582718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 38146043 - 38146131
Alignment:
| Q |
312 |
accctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgatt |
399 |
Q |
| |
|
|||||||||||| || |||||| || |||||| |||||||||| ||||| || || ||||||| |||||||||||||||| ||||||| |
|
|
| T |
38146043 |
accctttgaactctaagtagaatgtaaacaacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgatt |
38146131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 44198811 - 44198890
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| | |||||| |||||||| ||||| ||||||| ||||||| ||||| |
|
|
| T |
44198811 |
tcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttt |
44198890 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 441
Target Start/End: Original strand, 22198031 - 22198103
Alignment:
| Q |
369 |
caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| | ||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
22198031 |
caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc |
22198103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 22239790 - 22239718
Alignment:
| Q |
369 |
caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| | ||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
22239790 |
caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc |
22239718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 441
Target Start/End: Complemental strand, 28517408 - 28517277
Alignment:
| Q |
311 |
aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac |
409 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| |||| ||||| ||||| || || ||||| |||||||||||||||||| ||||||| | | ||||| |
|
|
| T |
28517408 |
aaccctttggactctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac |
28517309 |
T |
 |
| Q |
410 |
attttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| |
|
|
| T |
28517308 |
gctttctcatgtttggccactttgcttgacgc |
28517277 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 9281251 - 9281138
Alignment:
| Q |
312 |
accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca |
410 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |||| || | |||||| ||||| |||||||| || ||||||| | |||||| |
|
|
| T |
9281251 |
accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg |
9281152 |
T |
 |
| Q |
411 |
ttttctcatatttg |
424 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
9281151 |
ctttctcatgtttg |
9281138 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 9292222 - 9292109
Alignment:
| Q |
312 |
accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca |
410 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |||| || | |||||| ||||| |||||||| || ||||||| | |||||| |
|
|
| T |
9292222 |
accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg |
9292123 |
T |
 |
| Q |
411 |
ttttctcatatttg |
424 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
9292122 |
ctttctcatgtttg |
9292109 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 982990 - 983066
Alignment:
| Q |
365 |
gtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| | |||||| |||||||| ||||| ||||||| ||||||| |
|
|
| T |
982990 |
gtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgc |
983066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 447
Target Start/End: Complemental strand, 21326954 - 21326822
Alignment:
| Q |
316 |
tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt |
414 |
Q |
| |
|
|||||||| |||||| ||| |||||| | |||||||||| ||| | | || ||||| ||||||||||||||| || ||||||| | |||||| ||| |
|
|
| T |
21326954 |
tttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt |
21326855 |
T |
 |
| Q |
415 |
ctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||| ||||| ||||||| |||||||| |||| |
|
|
| T |
21326854 |
ctcatgtttggccactttgcttgacgcggcttt |
21326822 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 17249368 - 17249289
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| | ||||||| |||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
17249368 |
tcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttt |
17249289 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 532
Target Start/End: Complemental strand, 4206712 - 4206494
Alignment:
| Q |
316 |
tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt |
414 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||| ||| | || ||||| ||||||| ||||||| || ||| ||| | |||||| ||| |
|
|
| T |
4206712 |
tttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgcttt |
4206613 |
T |
 |
| Q |
415 |
ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag |
513 |
Q |
| |
|
||||| ||| | ||||||| ||||||| ||||| | | || ||||| | || ||||||| |||| | ||||| |||||||||||||| |||| ||||| |
|
|
| T |
4206612 |
ctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaag |
4206513 |
T |
 |
| Q |
514 |
cgtacacatgcatgttttc |
532 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4206512 |
tctacacatgcatgttttc |
4206494 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 532
Target Start/End: Original strand, 12401428 - 12401540
Alignment:
| Q |
421 |
tttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaagcgtaca |
519 |
Q |
| |
|
||||| ||||||||||||||| ||||| || || | ||| | || |||||||| ||| |||||||| || ||||||||||| |||||||||| |||| |
|
|
| T |
12401428 |
tttggccactttgtttgacgcaacttttagtgctgcttgtcctaccataaaagccctgaaccataatcccataagtggtgaaaccccaatcaagtctaca |
12401527 |
T |
 |
| Q |
520 |
catgcatgttttc |
532 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12401528 |
catgcatgttttc |
12401540 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 447
Target Start/End: Complemental strand, 34554389 - 34554261
Alignment:
| Q |
320 |
aactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctca |
418 |
Q |
| |
|
|||| ||||||||| ||||| | |||||||||||| |||| | ||| ||||| | |||||||||||||||| |||||| | |||||| ||||||| |
|
|
| T |
34554389 |
aactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacacgctttctca |
34554290 |
T |
 |
| Q |
419 |
tatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
| ||||||| |||| ||||||| ||||| |
|
|
| T |
34554289 |
tgtttggtcgttttgcttgacgcaacttt |
34554261 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 532
Target Start/End: Complemental strand, 23484994 - 23484836
Alignment:
| Q |
375 |
caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc |
474 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||| |||||||||||||| |||||||||||||| |||| ||| || ||| |||| || |||| |
|
|
| T |
23484994 |
caaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccaccgttaaagg |
23484895 |
T |
 |
| Q |
475 |
cttgatccataatcgcacaagtggtgaaaccc-aatcaagcgtacacatgcatgttttc |
532 |
Q |
| |
|
| || | ||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
23484894 |
cccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttc |
23484836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 28225044 - 28225117
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| | ||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
28225044 |
tcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgc |
28225117 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 506
Target Start/End: Complemental strand, 7760866 - 7760771
Alignment:
| Q |
411 |
ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc |
506 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||| | | ||| |||| |||||| |||| | ||||||| ||||||||||||||||| |
|
|
| T |
7760866 |
ttttctcatgattggccactttacttgacgcgactttgagggttgcttgtcccaccataaaagtcttggttcataatcccacaagtggtgaaaccc |
7760771 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 441
Target Start/End: Original strand, 5532407 - 5532536
Alignment:
| Q |
312 |
accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca |
410 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| | |||||||| |||| ||| || ||||| | |||| |||||||| || ||||||| | ||||| |
|
|
| T |
5532407 |
accctttgaactctatgtagaagctcaacaacctatggtgctaggaagctaa-agtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacg |
5532505 |
T |
 |
| Q |
411 |
ttttctcatatttggtcactttgtttgacgc |
441 |
Q |
| |
|
||||||||| |||| ||||||| ||||||| |
|
|
| T |
5532506 |
ttttctcatgtttgaccactttgcttgacgc |
5532536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 49455 - 49534
Alignment:
| Q |
368 |
tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| | |||||| ||||||| ||||| |||||||||||| || ||||| |
|
|
| T |
49455 |
tcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgcaacttt |
49534 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 447
Target Start/End: Original strand, 6325 - 6457
Alignment:
| Q |
316 |
tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt |
414 |
Q |
| |
|
|||||||| |||||||||| |||||| | |||||||||| ||| | | || ||||| |||||||||||| || || ||||||| | |||||| ||| |
|
|
| T |
6325 |
tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgcttt |
6424 |
T |
 |
| Q |
415 |
ctcatatttggtcactttgtttgacgcgacttt |
447 |
Q |
| |
|
||||| ||||| |||||| ||||||| ||||| |
|
|
| T |
6425 |
ctcatgtttggccactttacttgacgcaacttt |
6457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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