View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12594_low_4 (Length: 545)

Name: NF12594_low_4
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12594_low_4
NF12594_low_4
[»] chr1 (6 HSPs)
chr1 (18-525)||(7432917-7433424)
chr1 (299-532)||(34644540-34644775)
chr1 (368-442)||(28041116-28041190)
chr1 (311-454)||(2764465-2764609)
chr1 (374-447)||(25375817-25375890)
chr1 (464-532)||(37932116-37932185)
[»] chr5 (6 HSPs)
chr5 (312-447)||(37873622-37873758)
chr5 (299-438)||(25663025-25663165)
chr5 (375-447)||(15292010-15292082)
chr5 (378-447)||(32230491-32230560)
chr5 (368-441)||(14423722-14423795)
chr5 (368-532)||(33691953-33692118)
[»] chr8 (5 HSPs)
chr8 (294-532)||(39434636-39434876)
chr8 (316-532)||(24125019-24125237)
chr8 (312-532)||(25021712-25021934)
chr8 (312-437)||(38815281-38815407)
chr8 (376-532)||(500279-500436)
[»] chr4 (7 HSPs)
chr4 (311-506)||(55933387-55933581)
chr4 (316-441)||(34107684-34107812)
chr4 (311-441)||(53619572-53619703)
chr4 (369-439)||(600684-600754)
chr4 (368-445)||(41440068-41440145)
chr4 (311-358)||(4419249-4419297)
chr4 (315-386)||(38535614-38535686)
[»] chr3 (5 HSPs)
chr3 (376-532)||(49018015-49018172)
chr3 (316-439)||(52741504-52741628)
chr3 (375-532)||(13582560-13582718)
chr3 (312-399)||(38146043-38146131)
chr3 (368-447)||(44198811-44198890)
[»] chr7 (7 HSPs)
chr7 (369-441)||(22198031-22198103)
chr7 (369-441)||(22239718-22239790)
chr7 (311-441)||(28517277-28517408)
chr7 (312-424)||(9281138-9281251)
chr7 (312-424)||(9292109-9292222)
chr7 (365-441)||(982990-983066)
chr7 (316-447)||(21326822-21326954)
[»] chr6 (4 HSPs)
chr6 (368-447)||(17249289-17249368)
chr6 (316-532)||(4206494-4206712)
chr6 (421-532)||(12401428-12401540)
chr6 (320-447)||(34554261-34554389)
[»] chr2 (4 HSPs)
chr2 (375-532)||(23484836-23484994)
chr2 (368-441)||(28225044-28225117)
chr2 (411-506)||(7760771-7760866)
chr2 (312-441)||(5532407-5532536)
[»] scaffold0031 (1 HSPs)
scaffold0031 (368-447)||(49455-49534)
[»] scaffold0490 (1 HSPs)
scaffold0490 (316-447)||(6325-6457)


Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 7432917 - 7433424
Alignment:
18 attattagattagattataggtttctttttaagtggatagttggcctctcagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7432917 attattagattagattataggtttctttttaagtggatagttggcctctcagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttac 7433016  T
118 gtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaattacaaaatatatgtgaagctttttaatttgattaattgcactccct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
7433017 gtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaatgacaaaatatatgtgaagctttttaatttgattaattgcactccct 7433116  T
218 ctattttaactcgacttttattgataaagaattctctttttcatatgaacataatatctatgcacataggagatatattagattgatatggacaaccctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
7433117 ctattttaactcgacttttattgataaagaattctctttttcatatgaacataatatctatgcacataggagatatattagattgatatggattacccgt 7433216  T
318 tgaactttatgtagaagtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctc 417  Q
    | ||||||| |||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
7433217 tcaactttacgtagaaatcaacaacctctggtgctatgaagttaagtgtgtcaaatgcaaatggtataaaaatacgttgattttatgaacacattttctc 7433316  T
418 atatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaacccaatcaagcgta 517  Q
    ||||||| |||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7433317 atatttgatcactttgcttgacgcgactttgaagacttcctgtcccactgtaaaagccttgatccataatcgcacaagtggtgaaacccaatcaagcgta 7433416  T
518 cacatgca 525  Q
    ||||||||    
7433417 cacatgca 7433424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 532
Target Start/End: Original strand, 34644540 - 34644775
Alignment:
299 attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga 397  Q
    ||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| ||||   |  || |||||  |||||||||||||| || || |     
34644540 attgatatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtagg 34644639  T
398 ttttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtg 497  Q
    || |  ||||||  |||||||| ||||| ||||||||||||||| ||||| |||  | | ||| | || |||||||||  || || ||| | ||||||||    
34644640 ttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtg 34644739  T
498 gtgaaa-cccaatcaagcgtacacatgcatgttttc 532  Q
    |||||| |||| |||||   ||||||||||||||||    
34644740 gtgaaaccccagtcaagtccacacatgcatgttttc 34644775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 28041190 - 28041116
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcg 442  Q
    ||||| |||||||||||||||||  ||||||| |  ||||||| |||||||| ||||| ||||||||||||||||    
28041190 tcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcg 28041116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 454
Target Start/End: Original strand, 2764465 - 2764609
Alignment:
311 aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 409  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||| |||| | |  || ||||| | |||||| |||||| || ||||||| |  ||||||    
2764465 aaccctttggactttatgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacac 2764564  T
410 attttctcatatttggtcactttgtttgacgcgactttgaggact 454  Q
     ||||||||| ||||  |||||||| |||| | ||||| ||||||    
2764565 gttttctcatgtttgaccactttgtctgacacaacttttaggact 2764609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 25375890 - 25375817
Alignment:
374 gcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 447  Q
    |||||||||||||||||| ||||||  || |||||  |||| |||| ||||||||||||| ||||||| |||||    
25375890 gcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaacttt 25375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 532
Target Start/End: Complemental strand, 37932185 - 37932116
Alignment:
464 actgtaaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 532  Q
    |||||||||||||||  || ||||| |||||||||||||||| ||||||||   || |||||||||||||    
37932185 actgtaaaagccttggcccctaatcccacaagtggtgaaacctcaatcaagtccacgcatgcatgttttc 37932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 312 - 447
Target Start/End: Complemental strand, 37873758 - 37873622
Alignment:
312 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 410  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||||  ||  || ||||| |||||||||||||||||| ||||||| |  ||||||     
37873758 accctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacg 37873659  T
411 ttttctcatatttggtcactttgtttgacgcgacttt 447  Q
     |||||||| ||||| ||||||| ||||||| |||||    
37873658 ctttctcatgtttggccactttgcttgacgcaacttt 37873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 299 - 438
Target Start/End: Complemental strand, 25663165 - 25663025
Alignment:
299 attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga 397  Q
    ||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| |||| | |  || ||||| |||||||||||||||||| |||||    
25663165 attgatatgcataaccctttggactctatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttga 25663066  T
398 ttttatgaacacattttctcatatttggtcactttgtttga 438  Q
    || |  ||||||  |||||||| ||||| ||||||||||||    
25663065 ttatcagaacacgctttctcatgtttggccactttgtttga 25663025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 15292082 - 15292010
Alignment:
375 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||| ||||||||||| ||||||| |  |||||| ||||||||| ||||| ||||||||||||||| |||||    
15292082 caaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttt 15292010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 32230560 - 32230491
Alignment:
378 atggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||||||||| |  ||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||    
32230560 atggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaacttt 32230491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 14423722 - 14423795
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 441  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| || |||||||||| |||||||    
14423722 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgc 14423795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 532
Target Start/End: Complemental strand, 33692118 - 33691953
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactg 467  Q
    ||||| |||||||||| |||| || ||||||| |   ||||| |||| |||| ||||| ||||||| |||||||  |||| ||| || | ||| | || |    
33692118 tcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccg 33692019  T
468 taaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 532  Q
    ||||||||  || || ||| | |||||||||||||||| || |||||   ||||||||||||||||    
33692018 taaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttc 33691953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 294 - 532
Target Start/End: Original strand, 39434636 - 39434876
Alignment:
294 attagattgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacac 392  Q
    |||| ||||||||| | ||||||||| ||| |||||||||| ||||   | |||| ||||| ||||| ||  || |||||  |||||||||||||| ||     
39434636 attacattgatatgcataaccctttggactctatgtagaagatcaaatgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcat 39434735  T
393 gttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcac 492  Q
    ||||||| |  ||||||  |||||||| ||||| ||||||| ||||||| ||||| ||  |||| ||| | |||||||||||||  | || ||| | |||    
39434736 gttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactgtaaaagcctccacccctaaacccac 39434835  T
493 aagtggtgaaa-cccaatcaagcgtacacatgcatgttttc 532  Q
    ||||||||||| |||| |||||   ||||||||||||||||    
39434836 aagtggtgaaaccccagtcaagtacacacatgcatgttttc 39434876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 532
Target Start/End: Original strand, 24125019 - 24125237
Alignment:
316 tttgaactttatgtagaagtc-aacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 414  Q
    ||||||||||||||||||| | |||||| |||||||||| ||| | ||   | ||||| ||||||||||||||| || ||||||| |  || |||  |||    
24125019 tttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgcttt 24125118  T
415 ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag 513  Q
    ||||| ||||| || |||| |||| ||  |||| ||| || | ||| |||| ||||||| |  ||  ||||||| |||||||||||||| |||| |||||    
24125119 ctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagtcaag 24125218  T
514 cgtacacatgcatgttttc 532  Q
      |||||||||||||||||    
24125219 tctacacatgcatgttttc 24125237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 532
Target Start/End: Complemental strand, 25021934 - 25021712
Alignment:
312 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 410  Q
    |||||||||||||| ||| || | |||||||| |||||||||| ||||  ||   | ||||| | |||||||||||||||| ||||||| |  |||||||    
25021934 accctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca 25021835  T
411 ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaac-ccaat 509  Q
     ||||||||||||   ||||||| ||||| | ||||| ||| ||  ||||   ||||||||| | | || || ||||| ||||||||||||||| ||  |    
25021834 ctttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaactccggt 25021735  T
510 caagcgtacacatgcatgttttc 532  Q
    ||||   ||||||||||||||||    
25021734 caagtccacacatgcatgttttc 25021712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 38815281 - 38815407
Alignment:
312 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 410  Q
    |||||||||||| |||||||||| |||||| | |||||||||| ||||   |  || ||||| ||||||||||||||| || ||||||| |  ||||||     
38815281 accctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacg 38815380  T
411 ttttctcatatttggtcactttgtttg 437  Q
     |||||||| ||||| |||||||||||    
38815381 ctttctcatgtttggccactttgtttg 38815407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 532
Target Start/End: Original strand, 500279 - 500436
Alignment:
376 aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc 475  Q
    ||||||||||||| || ||||||| |  |||||| ||||||||| ||||| ||||||| ||||||| ||||| ||| ||    || | || ||||||| |    
500279 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccgtaaaaggc 500378  T
476 ttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 532  Q
      ||  | ||||| |||||||||||||||| || |||||  |||||||||||||||||    
500379 ccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttc 500436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 506
Target Start/End: Complemental strand, 55933581 - 55933387
Alignment:
311 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 409  Q
    ||||||||| ||| |||||||||| ||||||||  ||| ||||| |||||  |  || ||||| ||||||||||||||| || ||||||| |  |||||     
55933581 aaccctttggactctatgtagaaggtcaacaac--ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaa 55933484  T
410 attttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc 506  Q
    | |||||||| ||||| ||||||||||||||| ||||| ||| ||   ||| | || ||||||||| ||| || ||| | |||||| ||||||||||    
55933483 actttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctaccgtaaaagccctgacccttaaacccacaaggggtgaaaccc 55933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 441
Target Start/End: Complemental strand, 34107812 - 34107684
Alignment:
316 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca--tt 412  Q
    |||||||| |||||||||| |||||| | |||||||||| ||| |  |  || |||||  ||||||||||||||||| ||||||| | ||||||||  ||    
34107812 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgattatctgaacacacgtt 34107713  T
413 ttctcatatttggtcactttgtttgacgc 441  Q
    ||||||| ||||| ||||| |||||||||    
34107712 ttctcatgtttggccacttcgtttgacgc 34107684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 441
Target Start/End: Original strand, 53619572 - 53619703
Alignment:
311 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 409  Q
    ||||||||  ||| |||||||||| |||||  | |||| ||||| ||||| ||  || |||||  |||||||||||||| || ||||||| |  ||||||    
53619572 aaccctttagactctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac 53619671  T
410 attttctcatatttggtcactttgtttgacgc 441  Q
     ||||||||| ||||| ||||||| |||||||    
53619672 gttttctcatgtttggccactttgcttgacgc 53619703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 600754 - 600684
Alignment:
369 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgac 439  Q
    |||| ||||||||||||||| || ||| ||| |  |||||| ||||||||| ||||||||||||| |||||    
600754 caaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgac 600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 41440145 - 41440068
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgact 445  Q
    ||||||| |||| ||||||||||||||||| | |  ||||||||||||| || ||||   ||||||||||| ||||||    
41440145 tcaaatgtaaatagtataaaaacacgttgaatgttagaacacattttcttatgtttgactactttgtttgaagcgact 41440068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 4419249 - 4419297
Alignment:
311 aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaag 358  Q
    ||||||||||||| ||||||||| ||||||||| |||| ||||||||||    
4419249 aaccctttgaactctatgtagaaggtcaacaacctctgatgctacgaag 4419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 38535686 - 38535614
Alignment:
315 ctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataa 386  Q
    ||||||||| |||||||| | | |||||| |||||||||| ||||| ||  || |||||||||||||||||||    
38535686 ctttgaactctatgtagagggtgaacaacctctggtgctaggaagtcaaaagtgtcaaatgcaaatggtataa 38535614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 532
Target Start/End: Original strand, 49018015 - 49018172
Alignment:
376 aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc 475  Q
    |||||||||||||||| ||||||| |  ||||||| |||||||| |||||||||||||||| |||  ||||| |||  | | ||| | || ||||||| |    
49018015 aaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtcctaccgtaaaaggc 49018114  T
476 ttgatccataatcgcacaagtggtgaaac-ccaatcaagcgtacacatgcatgttttc 532  Q
    | ||  | ||||  ||||||||||||||| ||| |||||  |||||||||||||||||    
49018115 tcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttc 49018172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 439
Target Start/End: Complemental strand, 52741628 - 52741504
Alignment:
316 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 414  Q
    |||||||| |||||||||| |||||||| |||||||||| |||   ||  || ||||| ||||||||||||||| || ||||||| |  ||||||  |||    
52741628 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 52741529  T
415 ctcatatttggtcactttgtttgac 439  Q
    ||||| |||||||| ||||||||||    
52741528 ctcatgtttggtcaatttgtttgac 52741504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 532
Target Start/End: Original strand, 13582560 - 13582718
Alignment:
375 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc 474  Q
    ||||||||||||||||||||||||| |  ||||||| ||||| || |||| |||||||| |||||||  |||| ||| || | ||| | || |||||||     
13582560 caaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggtaaaagg 13582659  T
475 cttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 532  Q
    | |||  | ||||| |||||||| ||||||| |  |||||  |||||||||||||||||    
13582660 cctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttc 13582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 38146043 - 38146131
Alignment:
312 accctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgatt 399  Q
    |||||||||||| || |||||| || |||||| |||||||||| ||||| ||  || ||||||| |||||||||||||||| |||||||    
38146043 accctttgaactctaagtagaatgtaaacaacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgatt 38146131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 44198811 - 44198890
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| ||||| ||||||| ||||||| |||||    
44198811 tcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 44198890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 441
Target Start/End: Original strand, 22198031 - 22198103
Alignment:
369 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 441  Q
    |||| |||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||||||| |||||||    
22198031 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 22239790 - 22239718
Alignment:
369 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 441  Q
    |||| |||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||||||| |||||||    
22239790 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22239718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 441
Target Start/End: Complemental strand, 28517408 - 28517277
Alignment:
311 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 409  Q
    ||||||||| ||| |||||||||| |||||    |||| ||||| ||||| ||  || ||||| |||||||||||||||||| ||||||| | | |||||    
28517408 aaccctttggactctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac 28517309  T
410 attttctcatatttggtcactttgtttgacgc 441  Q
      |||||||| ||||| ||||||| |||||||    
28517308 gctttctcatgtttggccactttgcttgacgc 28517277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 9281251 - 9281138
Alignment:
312 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 410  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||  ||   | |||||| ||||| |||||||| || ||||||| |  ||||||     
9281251 accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg 9281152  T
411 ttttctcatatttg 424  Q
     |||||||| ||||    
9281151 ctttctcatgtttg 9281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 9292222 - 9292109
Alignment:
312 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 410  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||  ||   | |||||| ||||| |||||||| || ||||||| |  ||||||     
9292222 accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg 9292123  T
411 ttttctcatatttg 424  Q
     |||||||| ||||    
9292122 ctttctcatgtttg 9292109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 982990 - 983066
Alignment:
365 gtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 441  Q
    |||||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| ||||| ||||||| |||||||    
982990 gtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgc 983066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 447
Target Start/End: Complemental strand, 21326954 - 21326822
Alignment:
316 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 414  Q
    |||||||| |||||| ||| |||||| | |||||||||| ||| |  |  || ||||| ||||||||||||||| || ||||||| |  ||||||  |||    
21326954 tttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 21326855  T
415 ctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||| ||||| ||||||| |||||||| ||||    
21326854 ctcatgtttggccactttgcttgacgcggcttt 21326822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 17249368 - 17249289
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||| |||||||| ||||| ||||||||||||||| |||||    
17249368 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttt 17249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 532
Target Start/End: Complemental strand, 4206712 - 4206494
Alignment:
316 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 414  Q
    |||||||| |||||||||| |||||||| |||||||||| |||    |  || ||||| ||||||| ||||||| || ||| ||| |  ||||||  |||    
4206712 tttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgcttt 4206613  T
415 ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag 513  Q
    ||||| ||| | ||||||| ||||||| ||||| | | || ||||| | || |||||||   |||| | ||||| |||||||||||||| |||| |||||    
4206612 ctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaag 4206513  T
514 cgtacacatgcatgttttc 532  Q
      |||||||||||||||||    
4206512 tctacacatgcatgttttc 4206494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 532
Target Start/End: Original strand, 12401428 - 12401540
Alignment:
421 tttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaagcgtaca 519  Q
    ||||| ||||||||||||||| ||||| ||  || | ||| | ||  |||||||| ||| |||||||| || ||||||||||| ||||||||||  ||||    
12401428 tttggccactttgtttgacgcaacttttagtgctgcttgtcctaccataaaagccctgaaccataatcccataagtggtgaaaccccaatcaagtctaca 12401527  T
520 catgcatgttttc 532  Q
    |||||||||||||    
12401528 catgcatgttttc 12401540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 447
Target Start/End: Complemental strand, 34554389 - 34554261
Alignment:
320 aactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctca 418  Q
    |||| ||||||||| ||||| | |||||||||||| ||||   | ||| ||||| | ||||||||||||||||  |||||| |  ||||||  |||||||    
34554389 aactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacacgctttctca 34554290  T
419 tatttggtcactttgtttgacgcgacttt 447  Q
    | |||||||  |||| ||||||| |||||    
34554289 tgtttggtcgttttgcttgacgcaacttt 34554261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 532
Target Start/End: Complemental strand, 23484994 - 23484836
Alignment:
375 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc 474  Q
    |||||||||||||| || ||||||| |  |||||   |||||||||||||| ||||||||||||||   |||| ||| ||   ||| |||| || ||||     
23484994 caaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccaccgttaaagg 23484895  T
475 cttgatccataatcgcacaagtggtgaaaccc-aatcaagcgtacacatgcatgttttc 532  Q
    |  ||  | ||||| ||||||||||||||||| |||||||  |||||||||||||||||    
23484894 cccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttc 23484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 28225044 - 28225117
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 441  Q
    ||||| ||||||||||||||| || ||||||| |  ||| ||  |||||||||||||||||||||| |||||||    
28225044 tcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgc 28225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 506
Target Start/End: Complemental strand, 7760866 - 7760771
Alignment:
411 ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc 506  Q
    |||||||||  |||| ||||||  |||||||||||||||||  | | ||| ||||  |||||| |||| | ||||||| |||||||||||||||||    
7760866 ttttctcatgattggccactttacttgacgcgactttgagggttgcttgtcccaccataaaagtcttggttcataatcccacaagtggtgaaaccc 7760771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 441
Target Start/End: Original strand, 5532407 - 5532536
Alignment:
312 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 410  Q
    |||||||||||| |||||||||| |||||||| | |||||||| |||| |||  || ||||| | |||| |||||||| || ||||||| |   |||||     
5532407 accctttgaactctatgtagaagctcaacaacctatggtgctaggaagctaa-agtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacg 5532505  T
411 ttttctcatatttggtcactttgtttgacgc 441  Q
    ||||||||| ||||  ||||||| |||||||    
5532506 ttttctcatgtttgaccactttgcttgacgc 5532536  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 49455 - 49534
Alignment:
368 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||| ||||||||||||||| |||||||||| |  ||||||  ||||||| |||||  |||||||||||| || |||||    
49455 tcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgcaacttt 49534  T

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Target: scaffold0490 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 447
Target Start/End: Original strand, 6325 - 6457
Alignment:
316 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 414  Q
    |||||||| |||||||||| |||||| | |||||||||| |||  | |  || ||||| |||||||||||| || || ||||||| |  ||||||  |||    
6325 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgcttt 6424  T
415 ctcatatttggtcactttgtttgacgcgacttt 447  Q
    ||||| ||||| ||||||  ||||||| |||||    
6425 ctcatgtttggccactttacttgacgcaacttt 6457  T

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