View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12594_low_5 (Length: 501)
Name: NF12594_low_5
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 483
Target Start/End: Complemental strand, 45521391 - 45520929
Alignment:
| Q |
22 |
tatggttgcatccacttccccactactcttgcacgnnnnnnncctgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngtg |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45521391 |
tatggttgcatccacttccccaatactcttgcacgtttttttcctgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgtt |
45521292 |
T |
|
| Q |
122 |
gcttttaatttttgtgattaatttatcatttctcaaaaagaaagagtaaccagagtaaaataattgtttctcgattgcatgccttcaaggaaaaaatgga |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
45521291 |
gcttttaatttctgtgattaatttatcatttctcaaagagaaagagtaaccagagtaaaataattgtttgtcgattgcatgccttcaagcaaaaaatgga |
45521192 |
T |
|
| Q |
222 |
agnnnnnnnnngagaagaaatttgattttgggtggctgtagtttgtgtagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacac |
321 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
45521191 |
agaaaaaaaa-gagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatgaaaggagttaaaacac |
45521093 |
T |
|
| Q |
322 |
aagtgtggtgtgtggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgaca |
419 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
45521092 |
aagtgtggtgtatggtggttgtagttgatgataaaagttacccaattgaatgttaatgcttccatagaaacagataaaaatcaaaatataaacagtgaca |
45520993 |
T |
|
| Q |
420 |
cgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctca |
483 |
Q |
| |
|
| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45520992 |
cataaatgaaagcctcacgcatgttaattacgtaaagggtgagacaaatgaggagtcaatctca |
45520929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 233 - 483
Target Start/End: Complemental strand, 10566734 - 10566484
Alignment:
| Q |
233 |
gagaagaaatttgattttgggtggctgtagtttgtgtagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgt |
332 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566734 |
gagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgt |
10566635 |
T |
|
| Q |
333 |
gtggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaactgacacgtaaatgaaagt |
432 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10566634 |
atggtggttgtagttgatgataaaagttacccaactgaatgttaatgcttctatagaaacaaataaaaatcaaaatataatttgacacgtaaatgaaagt |
10566535 |
T |
|
| Q |
433 |
ctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctca |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566534 |
ctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctca |
10566484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 10566918 - 10566757
Alignment:
| Q |
22 |
tatggttgcatccacttccccactactcttgcacgnnnnnnncc-tgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngt |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10566918 |
tatggttgcatccacttccccaatactcttgcacgttttttttcatgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgt |
10566819 |
T |
|
| Q |
121 |
ggcttttaatttttgtgattaatttatcatttctcaaaaagaaagagtaaccagagtaaaat |
182 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566818 |
tgcgtttaatttctgtgattaatttatcatttctcaaaaagaaagagtaaccagagtaaaat |
10566757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 169 - 466
Target Start/End: Original strand, 52727974 - 52728266
Alignment:
| Q |
169 |
aaccagagtaaaataattgtttctcgattgcatgccttcaaggaaaaaatggaagnnnnnnnnngagaagaaatttgattttgggtggctgtagtttgtg |
268 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||||||| ||||| ||||| ||||| | ||||||||| |||||| ||||||||||| |
|
|
| T |
52727974 |
aaccagagtaaaataattgtttgtcaattgaatgccttcaagcaaaaattggaa-----aaaaggagaaaatatttgatttagggtggttgtagtttgtg |
52728068 |
T |
|
| Q |
269 |
tagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgtg-tggtggtcgtagttgatgataaaagttacccaac |
367 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||| ||| ||||| |
|
|
| T |
52728069 |
tagttgtgattgaaattttgaagcttgggggtgaatggaaggagttaaaacacaagtgtggtgtgatggtggttgtatttgatgttgaaaatta-ccaac |
52728167 |
T |
|
| Q |
368 |
tgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagaca |
465 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||||||||| || ||| | |||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
52728168 |
agaatgtaagtgctttcatagaaacaaataaaaatcaaaatatacacagtgagaaagaaatgaaagtctca--catgttaattacataaaaggagagaca |
52728265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University