View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_6 (Length: 436)
Name: NF12594_low_6
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 369
Target Start/End: Original strand, 4131906 - 4132095
Alignment:
| Q |
180 |
tccaagattgactgcattttgaatgctttcacttaaaacatggctaatttgcacctgcaaattctgcttaagtatactattaattttcttcactgattat |
279 |
Q |
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| T |
4131906 |
tccaaaattgtctgcattttgaatgctttcacttaaaacatggctgatttccatttgcaaattctgtttaagtatacaattaatttagttgatcaatcat |
4132005 |
T |
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| Q |
280 |
caagtatcctggtttccttatcttactccccttaaagcattaggatcagggcttcccaatctagttcaagctggacctctatgaaaccaa |
369 |
Q |
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| T |
4132006 |
caagtatcctggtttccttatcttattccccgtagagcattaggatcagggcttcccaatcaagctcatgttggacttctgtgaaaccaa |
4132095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 4337752 - 4337676
Alignment:
| Q |
19 |
ccttttatgagtaccaccatgtttccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataact |
95 |
Q |
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| T |
4337752 |
ccttttatgagtaccaccatgtttccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataact |
4337676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 4122035 - 4122110
Alignment:
| Q |
42 |
tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactgacaaatacattttttatgagg |
117 |
Q |
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| T |
4122035 |
tccaaattgaatgttaaaacatttttaaagcagtaattaaaaaattagataactaaaaaatacatattttgtgagg |
4122110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 4318584 - 4318658
Alignment:
| Q |
146 |
atacaatgaattcttcttgcatcatactaagatttccaagattgactgcattttgaatgctttcacttaaaacatg |
221 |
Q |
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| T |
4318584 |
atacaatgaattcttcttgaagcatactgaaatttccaagattggctgca-tttcaatgccttcatttaaaacatg |
4318658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 4318717 - 4318798
Alignment:
| Q |
291 |
gtttccttatcttactccccttaaagcattaggatcagggcttcccaatctagttcaagctggacctctatgaaaccaagat |
372 |
Q |
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| T |
4318717 |
gtttccttatcttactcccattaaagcattaggatccgagcttaccagtcaaactcaagttggatttctgtgaaaccaagat |
4318798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 4122270 - 4122380
Alignment:
| Q |
194 |
cattttgaatgctttcacttaaaacatggctaatttgcacctgcaaattctgctt-aagtatactattaattttcttcactgattatcaagtatcctggt |
292 |
Q |
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| T |
4122270 |
cattttgaatgccttctttgaaaacatggctgatttccatctgcaagttctgttttaagtctacttttcattttgttgatcaataatcaagtatcctggt |
4122369 |
T |
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| Q |
293 |
ttccttatctt |
303 |
Q |
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| T |
4122370 |
ttccttatctt |
4122380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 4131771 - 4131835
Alignment:
| Q |
42 |
tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactgacaaatacatttt |
109 |
Q |
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| T |
4131771 |
tccaaattgaatgtttaat---tttaaaagcaataattaaacagtgagataactaacaaatacatttt |
4131835 |
T |
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