View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_7 (Length: 431)
Name: NF12594_low_7
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 375861 - 375463
Alignment:
| Q |
15 |
ttcactggaactttatctgactcagtctctagtaggtgaatgccaatgccataattgaataacctagaagaaatgcaccatcagtaagcatgaaatgagt |
114 |
Q |
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| T |
375861 |
ttcactggaactttatctgactcagtttctagtaggtgaatgccaatgccataattgaataacctagaagaaatgcaccatcagtaagcatgaaatgagt |
375762 |
T |
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| Q |
115 |
tcatctcgattattcctttgtactcgtaaaatcaacaaaataactgtatacgtaagatctaatgtctttttggacaaaactgcataataaattgataatg |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
375761 |
tcatctcgattattcctttgtactcgtaaaattaacaaaataattgtatacgtaagatctaatgtctttttggacaaaactgcataataaattgataatg |
375662 |
T |
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| Q |
215 |
ctcctgcatgggaaatgtgtaggccactaggaatgaatttgggaactaaatcgttctcttatggtcacaaacaaatacacgagagggtgggtcattatat |
314 |
Q |
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| T |
375661 |
gtcctgcatgggaactttgtaggccactaggaatgaatttgggaactaaatcgttctcttatggtcacaaacaaatacacgagagggtgggtcattatat |
375562 |
T |
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| Q |
315 |
ctaccagccacaaggcctacgatttataagttttaactaatagaacatttctatttacgcccctcaatatctcttaggtttcctaaatacatactctct |
413 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
375561 |
ctaccagccacaaggcctacgatttataagctttaactaatagaacatttctatttacgcccctcaatatctcttaggtttcctaaatacatactctct |
375463 |
T |
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