View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12594_low_8 (Length: 381)
Name: NF12594_low_8
Description: NF12594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12594_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 31244176 - 31243833
Alignment:
| Q |
18 |
gatttgggtgtgaaggctatattttcacccatgtttccattatgagaaaatttatgacttatatttaatcacttcgtaccaaaagtgtatcttgtgttcg |
117 |
Q |
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| T |
31244176 |
gatttgggtgtgaaggctatattttcacccatgtttccattatgagaaaatttatgacttatatttaatcacttcgtaccaaaagtgtatcttgagttcg |
31244077 |
T |
|
| Q |
118 |
tgacatatcaatgtccattaacgcttacatttaatcacttatattttcttaaattattactagtgacttcaaatgctcttctatttta-nnnnnnncttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31244076 |
tgacatatcaatgtccattaacgcttacatttaatcacttatattttcttaaattattactagtgacttcaaatgctcttctattttattttttttcttg |
31243977 |
T |
|
| Q |
217 |
agaaaaataaagcttgcagggtacaagataaaatggtttaattagtttctggtttcgatttgcaacattgcttatatcttttatgttaatgctaaaacat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
31243976 |
agaaaaataaagcttgcagggtacaagataaaatggtttaactagtttctggttttgatttggaacattgtttatatcttttatgttaatgctaaaacat |
31243877 |
T |
|
| Q |
317 |
atttgagtacttcgtctattttgtgaattattctttcgtctatt |
360 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
31243876 |
atttgaatacttcgtctattttgtgaattattctttcatctatt |
31243833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 16331023 - 16330983
Alignment:
| Q |
142 |
ttacatttaatcacttatattttcttaaattattactagtg |
182 |
Q |
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||||||||||||| || ||||||||||||||||||||||| |
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| T |
16331023 |
ttacatttaatcattttcattttcttaaattattactagtg |
16330983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 13398386 - 13398352
Alignment:
| Q |
143 |
tacatttaatcacttatattttcttaaattattac |
177 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
13398386 |
tacatttaatcacttctattttcttaaattattac |
13398352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 6760514 - 6760554
Alignment:
| Q |
142 |
ttacatttaatcacttatattttcttaaattattactagtg |
182 |
Q |
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| T |
6760514 |
ttacatttaatcacttaaattttctcaaattattattagtg |
6760554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 8013855 - 8013895
Alignment:
| Q |
142 |
ttacatttaatcacttatattttcttaaattattactagtg |
182 |
Q |
| |
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||||||| ||||||||||||||| | ||||||||||||||| |
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|
| T |
8013855 |
ttacattcaatcacttatattttttcaaattattactagtg |
8013895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 17105304 - 17105264
Alignment:
| Q |
142 |
ttacatttaatcacttatattttcttaaattattactagtg |
182 |
Q |
| |
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||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
17105304 |
ttacattcaatcacttttattttcttaaattattattagtg |
17105264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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