View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_1 (Length: 648)
Name: NF12595_high_1
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 630
Target Start/End: Original strand, 27442593 - 27443212
Alignment:
| Q |
14 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
27442593 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacaacttcaataagttt--attcaacttcatggacaaaaataatttata |
27442690 |
T |
|
| Q |
114 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccagatttgtcatatctttgata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27442691 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccacatttgtcatatctttgata |
27442790 |
T |
|
| Q |
214 |
aattaattggtaa-tcattgtaatagatagactaattttagtcagataaaaaattgtcaagaactgattttgtcatgaaccagatggactcacgaaaata |
312 |
Q |
| |
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||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442791 |
aattaattggtaactcattgtaatagagagac-----ttagtgagataaaaaattgtcaagaactgattttgtcatgaaccagatggactcacgaaaata |
27442885 |
T |
|
| Q |
313 |
ttgttagaaattaaatcaagtcttcgttctaaatgaaatatataaataaattctttaacataagnnnnnnnnctttattttcgtcaataatatacgtaca |
412 |
Q |
| |
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|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27442886 |
ttgttagagattaaatcaaatcttcgctctaaatgaaatatataaataaattctttaacataatttttttttctttattttcgtcaataatatacgtaca |
27442985 |
T |
|
| Q |
413 |
tgggacaaagtaagtattatacgtaagatttgattgagacatttccaatgcatggaggctaaataaat-------aactatatacactgtagaattattc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
27442986 |
tgggacaaagtaagtattatacgtaagatttgattgagacatttccaatgcatggaggctaaataaatagaataaagatatatacactgtagaattattc |
27443085 |
T |
|
| Q |
506 |
catataagtgcctctcagttttttattgaccgagccaaatgaataccattcgttgaattaagattcaaaccatcgataaaagaaggctatata--tatgt |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
27443086 |
catataagtgcctctcagttttttattgaccgagccaaatggataccattcgttgaattaagattcaaaccatcgatagaagaaggctatatatttatgt |
27443185 |
T |
|
| Q |
604 |
catgaagcagagaacaacttcatcaat |
630 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
27443186 |
catgaagcagagaacaacttcatcaat |
27443212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 41 - 630
Target Start/End: Complemental strand, 27434007 - 27433412
Alignment:
| Q |
41 |
tctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttataaaagaacaatggataccaaattttgtc |
140 |
Q |
| |
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|||||||| ||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
27434007 |
tctaacacggaaaaattaaactacacaacttcaataagttt--attcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtc |
27433910 |
T |
|
| Q |
141 |
cctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccag-atttgtcatatctttgataaattaattggtaa-tcattgtaatag |
238 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| | | || ||||||||| ||||||||||| | ||| ||||| |||||| |
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| T |
27433909 |
cctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgaacaattttcatatcttagataaattaatcgttaactcattataatag |
27433810 |
T |
|
| Q |
239 |
atagactaattttagtcagataaaaaattgtcaagaactgattt----------tgtcatgaaccagatggactcacgaaaatattgttagaaattaaat |
328 |
Q |
| |
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| |||||||||| |||| ||| |||| ||||| |||||||||| ||||||| || |||| ||| ||||| ||| ||| | ||||||| |
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| T |
27433809 |
agagactaatttgtgtcaaatataaaaatgtcaggaactgatttgcttattttttgtcatggactagatagacctgtgaaaaaattattaaagattaaat |
27433710 |
T |
|
| Q |
329 |
caagtcttcgttctaaatgaaatatataaataaattcttt-aacataagnnnnnnnnctttattttcgtcaataatatacgtacatg----ggacaaagt |
423 |
Q |
| |
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||| ||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||| |||| |
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| T |
27433709 |
caaatcttcactctaaatgaaata---aaataaattctttcaacataattttttgtt-tttattttcgtcaataatatcagtacatgcataggaccaagt |
27433614 |
T |
|
| Q |
424 |
aagtattatacgtaagatttgattgagacatttccaatgcatggaggctaaataaataactatatacactgtagaattattccatataagtgcctctcag |
523 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||| |
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| T |
27433613 |
aagtacta--cgtaagatttgattgagacatttccaatggatggaggctaaataaataactatacacgccgtagaatagttccatataagtgcctctcag |
27433516 |
T |
|
| Q |
524 |
ttttttattgaccgagccaaatgaataccattcgttgaattaagattcaaaccatcgataaaagaaggctatatatatgtcatgaagcagagaacaactt |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||| ||| || |
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| T |
27433515 |
ttttttattgaccgagccaaatgaataccattcgttgaattaagattcaaaccatccat---agtaggctatatatatgtcaagaagcagagagcaattt |
27433419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 525 - 630
Target Start/End: Complemental strand, 27221733 - 27221631
Alignment:
| Q |
525 |
tttttattgaccgagccaaatgaataccattcgttgaattaagattcaaaccatcgataaaagaaggctatatatatgtcatgaagcagagaacaacttc |
624 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||| ||||||| |||||| | |||| |||||||||||||| |||||||||||||||||| |
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| T |
27221733 |
tttttattgaccgagtcaaattaatac-attcgttgaattacgattcaacccatcgg--atagaaatctatatatatgtcacgaagcagagaacaacttc |
27221637 |
T |
|
| Q |
625 |
atcaat |
630 |
Q |
| |
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|||||| |
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|
| T |
27221636 |
atcaat |
27221631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 27434138 - 27434051
Alignment:
| Q |
29 |
taataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttataaaaga |
118 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||| |||||||| || ||||||||||| || ||| ||||| |||||||||| |
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| T |
27434138 |
taataccaaaagtctaacacggaaaaattaaattacacaacttcaata--aattcattcaacttcacgggcaacaataaattataaaaga |
27434051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 629
Target Start/End: Complemental strand, 27215758 - 27215684
Alignment:
| Q |
552 |
cattcgttgaattaagattcaaaccatcgataaaagaaggctatatatatgtcatgaagcagagaacaacttcatcaa |
629 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| |||||||||||| | |||||||||| |||||||||||| |
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|
| T |
27215758 |
cattcgttgaatgacgattcaaaccatcgata---gaaatctatatatatgtaaagaagcagagagcaacttcatcaa |
27215684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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