View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_high_10 (Length: 493)

Name: NF12595_high_10
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_high_10
NF12595_high_10
[»] chr1 (2 HSPs)
chr1 (19-482)||(32239620-32240083)
chr1 (432-482)||(32239478-32239528)
[»] chr7 (2 HSPs)
chr7 (39-476)||(27118008-27118442)
chr7 (432-482)||(27117802-27117852)
[»] chr3 (1 HSPs)
chr3 (51-241)||(7266828-7267029)
[»] chr4 (4 HSPs)
chr4 (19-127)||(23011159-23011272)
chr4 (19-125)||(53371680-53371791)
chr4 (432-482)||(23010991-23011041)
chr4 (432-482)||(53371909-53371959)
[»] scaffold0316 (2 HSPs)
scaffold0316 (19-127)||(2797-2910)
scaffold0316 (432-482)||(3028-3078)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 32239620 - 32240083
Alignment:
Q  19 ctctacacctgtgattctctctattccttctccgtttcgtcgaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgtccatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32239620 ctctacacctgtgattctctctattccttctccgtttcgtcgaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgtccatc 32239719  T
Q  119 atcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttgaagct 218  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  32239720 atcattatttatagcaaaaggtggataacataaacgaaattgccactgctaacagcgatgggttagttttatttcgaattggaaaaggggatttgaagct 32239819  T
Q  219 atgaatatagtctaaattttattaacagaagttatgacatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttccaatt 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32239820 atgaatatagtctaaattttattaacagaagttatgatatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttccaatt 32239919  T
Q  319 aggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtctttca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32239920 aggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtctttca 32240019  T
Q  419 taaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32240020 taaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 32240083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 32239528 - 32239478
Alignment:
Q  432 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32239528 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 32239478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 39 - 476
Target Start/End: Original strand, 27118008 - 27118442
Alignment:
Q  39 ctattccttctccgtttcgt-----cgaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgtccatcatcat---tatttat 130  Q
    ||||||||||||||||||||     || ||||||||||||| ||||||| |||||||||||||||||||||| | ||| |||||||||||   |||||||    
T  27118008 ctattccttctccgtttcgttccgtcggaatatgttcaaatcaatggcagggttcttctttttattcatatttttcttatccatcatcatgattatttat 27118107  T
Q  131 agcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttgaagctatgaatatagtc 230  Q
    ||| |||| |||||  || |||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  27118108 agcgaaagatggatgacataaacgaaattgccactgttaatagcgatgggttaattttatttccaattggaaaaggggattttaagctatgaatacagtc 27118207  T
Q  231 taaattttattaacagaagttatgacatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttccaattaggaaaggggat 330  Q
    |||| |||||||||||||||||||| |||||||||   |||| ||||||||  |||||||| ||||||||| |||| ||||||||||||||||| |||||    
T  27118208 taaaatttattaacagaagttatgatatggttgaa---tttcgaacatcatgtgatgtttatcaatttgtgtgattctgtttccaattaggaaatgggat 27118304  T
Q  331 tgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtctttcataaaatgatgtt 430  Q
    |||||||||||||||||||||||||  |||||      ||||| |||||||||||| |||||||||||||||||||  ||| |||||||||| ||||| |    
T  27118305 tgtagaagacgatagaacatagagc--cagaa------cgagagcagaggaacggtggttgttacagtgtgtttcactgtgactttcataaattgatgct 27118396  T
Q  431 ttttaatcctagccatctgatttttagttgccacgtgtcatccatc 476  Q
    ||||||| ||| |  ||  | ||||| ||||||| |||||||||||    
T  27118397 ttttaattctaactctcgaaattttaattgccacatgtcatccatc 27118442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 27117852 - 27117802
Alignment:
Q  432 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 482  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||| |||||    
T  27117852 tttaatcctagctatcggatttttagttgccatgtgtcatccatcggtgaa 27117802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 7266828 - 7267029
Alignment:
Q  51 cgtttcgtcgaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgtccatcatc---attatttatagcaaaaggtggatagc 147  Q
    |||| ||||| |||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||   |||||||||||| ||||||||||  |    
T  7266828 cgttccgtcggaatatgatcaaattaatggcagggttcttctttttcttcatattgttcttgtccatcatcattattatttatagcgaaaggtggatgac 7266927  T
Q  148 agaaacaaaattgccactgctaa--------tagccatgggttagttttatttccaattggaaaaggggatttgaagctatgaatatagtctaaatttta 239  Q
    | ||||||||||| |||||||||        |||  |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  7266928 ataaacaaaattgtcactgctaatacctctgtagagatgggttaattttatttccaattgaaaaaggggatttgaagctatgaataaagtttaaatttta 7267027  T
Q  240 tt 241  Q
    ||    
T  7267028 tt 7267029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 23011159 - 23011272
Alignment:
Q  19 ctctacacctgtgattctctctattccttctccgtttcgtc-----gaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23011159 ctctccacctgtgattctctctattccttctccgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttctttttattcatattgttcttgt 23011258  T
Q  114 ccatcatcattatt 127  Q
    ||||||||||||||    
T  23011259 ccatcatcattatt 23011272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 53371791 - 53371680
Alignment:
Q  19 ctctacacctgtgattctctctattccttctccgtttcgtc-----gaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgt 113  Q
    |||| ||||||||||||||||||||||||||| ||||||||     | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53371791 ctctccacctgtgattctctctattccttctctgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttctttttattcatattgttcttgt 53371692  T
Q  114 ccatcatcatta 125  Q
    ||||||||||||    
T  53371691 ccatcatcatta 53371680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 23011041 - 23010991
Alignment:
Q  432 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23011041 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 23010991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 53371909 - 53371959
Alignment:
Q  432 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53371909 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 53371959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 2910 - 2797
Alignment:
Q  19 ctctacacctgtgattctctctattccttctccgtttcgtc-----gaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgt 113  Q
    |||| ||||||||||||||||||||||||||| ||||||||     | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2910 ctctccacctgtgattctctctattccttctctgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttctttttattcatattgttcttgt 2811  T
Q  114 ccatcatcattatt 127  Q
    ||||||||||||||    
T  2810 ccatcatcattatt 2797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 3028 - 3078
Alignment:
Q  432 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaa 482  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3028 tttaatcctaaccatctgatttttagttgccacgtgtcatccatcagtgaa 3078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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