View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_12 (Length: 487)
Name: NF12595_high_12
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 29 - 472
Target Start/End: Complemental strand, 1026775 - 1026333
Alignment:
| Q |
29 |
ttcctcaaatgggtttttcttatatatcagatcaagtttgtgattgcaattgccactacaatttacaacaccaagagattaagagagatgaatcttataa |
128 |
Q |
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| T |
1026775 |
ttcctcaaatgggtttttcttatatatcagatcaagtttgtgattgcaattgccactacaatttacaacaccaagagattaagagagatgaatcttataa |
1026676 |
T |
|
| Q |
129 |
tcagaaacaattctttggagttttaaattttgaagcttcactcttactctaaggtaacttactctcttaagctctcnnnnnnncttcagtcaatgtaata |
228 |
Q |
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| T |
1026675 |
tcagaaacaattctttggagttttaaattttgaagcttcactcttactctaaggtaacttactctcttaagctctctttttttcttcagtcaatgtaata |
1026576 |
T |
|
| Q |
229 |
tgtacattattagattaatgcactttgttttataagttctatactacggtcttgaccttaatttgagcttcaaaattgacaataagaatataatgcatgc |
328 |
Q |
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| T |
1026575 |
tgtacattattagattaatgcactttgttttataagttctatactacggtcttgaccttaatttgagcttcaaaattgacaataagaatataatgcatgc |
1026476 |
T |
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| Q |
329 |
aatttatatttatgatataatgnnnnnnnnnnnnngttgaaatctattcattcaatattaaactttgaaagtggatcttaactgcattttggatcttcat |
428 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1026475 |
aatttatatttatgatataatg-tattttttttttgttgaaatctattcattcaatattaaactttgaaagtggatcttaattgcattttggatcttcat |
1026377 |
T |
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| Q |
429 |
caatttgatgcatttttacatatctactagctaagctatttact |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1026376 |
caatttgatgcatttttacatatctactagctaagctatttact |
1026333 |
T |
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