View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_high_17 (Length: 433)

Name: NF12595_high_17
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_high_17
NF12595_high_17
[»] chr6 (3 HSPs)
chr6 (1-426)||(898144-898567)
chr6 (4-64)||(1194549-1194609)
chr6 (4-64)||(1183793-1183853)


Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 898144 - 898567
Alignment:
Q  1 gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898144 gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata 898243  T
Q  101 gttgatattctcttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacc 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898244 gttgatattctgttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacc 898343  T
Q  201 tttgtccagatttcaatcccaatagagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaaggtcggttttacctgaattttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898344 tttgtccagatttcaatcccaatagagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaaggtcggttttacctgaattttga 898443  T
Q  301 catagagaggtgccaataccacccccatctcttgatctcaaatttggtgccttcattggcctaaaataattatgcacatactctgtctcttctgaatcat 400  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898444 cat--agaggtgccaataccacccccatctcttgatctcaaatttggtgccttcattggcctaaaataattatgcacatactctgtctcttctgaatcat 898541  T
Q  401 tgaaaccttggtcctactagcctatg 426  Q
    ||||||||||||||||||||||||||    
T  898542 tgaaaccttggtcctactagcctatg 898567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 1194549 - 1194609
Alignment:
Q  4 acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta 64  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||| ||||    
T  1194549 acattcaaaaagttttccaatgcactagtcagggtaaattttgatgatccctcttttgcta 1194609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 1183793 - 1183853
Alignment:
Q  4 acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta 64  Q
    ||||||||||||| || ||||||| |||| ||| |||||||| ||||||||||||| ||||    
T  1183793 acattcaaaaagttttccaatgcattagtcaggttaaattttcatgatccctcttttgcta 1183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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