View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_19 (Length: 422)
Name: NF12595_high_19
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 4906300 - 4905896
Alignment:
| Q |
11 |
cataggtattaaacttgtaatgtatagggtatggtttgttttattgagaagcattgaatataaagtgatgatggtatggtcgtttaccaacaacaaaaaa |
110 |
Q |
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| T |
4906300 |
cataggtattaaacttgtaatgtatagggtatggtttgttttattgagaagcattgaatataaagtgatg---gtatggtcgtttaccaacaacaaaaaa |
4906204 |
T |
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| Q |
111 |
gtaaaggtgtggtca-----cggacgtagcgtggagaacatgagggcagttagtgatggtaagaaaatgtctttaatatattaggcagggtattattgtg |
205 |
Q |
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| T |
4906203 |
gtaaaggtgtggtcaggtcacggacgtagcgtggagaacatgagggcagttagtgatggtaagaaaaggtctttaatatattaggcagggtattattgtg |
4906104 |
T |
|
| Q |
206 |
gaccgttcatatttaatagacggaaagaacatgaagtatttttactcatcatatcattctcaatcattttactttaggacaaacaagcatagattattct |
305 |
Q |
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| T |
4906103 |
gaccgttcatatttaatagacggaaagaacatgaagtatttttactcatcatatcattctcaatcattttactttaggacaaacaagcatagattattct |
4906004 |
T |
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| Q |
306 |
attcaa-----aagataaaacaaagatggacagggttattatcccgaggctacttttcctcaaaacaaagtatcaaatccaaactgcataaaacgattca |
400 |
Q |
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| T |
4906003 |
attcaaaagaaaagataaaacaaagatggacagggttattatcccgaggctacttttcctcaaaacaaagtatcaaatccaaactgcataaaacgattca |
4905904 |
T |
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| Q |
401 |
tatcatgt |
408 |
Q |
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| T |
4905903 |
tatcatgt |
4905896 |
T |
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