View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_23 (Length: 388)
Name: NF12595_high_23
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_23 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 39 - 372
Target Start/End: Original strand, 18617470 - 18617801
Alignment:
| Q |
39 |
aaattaccctatttaatttaaatgaaaaagaaataaacaataaacaaaaacatattccacctacgattcttcttgcatgtacgtgtatataaacacaaca |
138 |
Q |
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| T |
18617470 |
aaattaccctatttaatttaaatgaaaaagaaataaacaataaa--aaaacatattccacctacgattcttcttgcatgtatgtgtatataaacacaaca |
18617567 |
T |
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| Q |
139 |
acttcacacaaaaacatgcacccctgtcttgtagaaacagagagtgtgtctttgttacaagaagaaatcaccatcatcaccatggcatcttcaacctttc |
238 |
Q |
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| T |
18617568 |
acttcacacaaaaacatgcacccctgtcttgtagaaacagagagtgtgtctttgttacaagaagaaatcaccatcatcaccatggcatcttcaacctttc |
18617667 |
T |
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| Q |
239 |
caacagtgaacaaatgcacctcaattggtagagaaaaacacacagtagtagcagacatggatggaaccttactaataggtcgtagttccttcccatattt |
338 |
Q |
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| T |
18617668 |
caacagtgaacaaatgcacctccattggtagagaaaagcacacagtagtagcagacatggatggaaccttactaataggtcgtagttcttttccatattt |
18617767 |
T |
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| Q |
339 |
tgctcttatagcctttgaagttggtggagttctt |
372 |
Q |
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| T |
18617768 |
tgctcttatagcctttgaagttggtggagttctt |
18617801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 17159096 - 17159225
Alignment:
| Q |
187 |
tctttgttacaagaagaaatcaccatcatcaccatggcatcttcaacctttccaacagtgaacaaatgcacctcaattggtagagaaaaacacacagtag |
286 |
Q |
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| T |
17159096 |
tctttgttacaagaagaaatcacca--------atggcatcttcaaccttttgaacagtgaacaaatgtacctcaattggtagagaaaagcacacagta- |
17159186 |
T |
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| Q |
287 |
tagcagacatggatggaaccttactaataggtcgtagtt |
325 |
Q |
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| T |
17159187 |
tagcaaatatggatgaaaccttactaataggtcgtagtt |
17159225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 90499 - 90571
Alignment:
| Q |
187 |
tctttgttacaagaagaaatcaccatcatcacca-tggcatcttcaacctttccaacagtgaacaaatgcacc |
258 |
Q |
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| T |
90499 |
tctttgttacaggaagaaatcaccaaaatcaccaatggcatcttcaacctttccaacaatgatcaaatgcacc |
90571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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