View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_high_27 (Length: 361)
Name: NF12595_high_27
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_27 |
 | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 2369218 - 2368885
Alignment:
| Q |
18 |
gttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2369218 |
gttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaat |
2369119 |
T |
|
| Q |
118 |
gcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2369118 |
gcaccatttgaaggccaaatgacattccagggcaaatccttctaccacctccaaatggtaatagctcaaaatgatgacctctaacatcaacgtctttatg |
2369019 |
T |
|
| Q |
218 |
ggtagtaagaaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttcctttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
2369018 |
ggtagtaagaaaccgctctggtttgaattccaatggatttgaccaaatatttggatcagtgtgaatctttctaagattcaaaattaaccgtgttcctttt |
2368919 |
T |
|
| Q |
318 |
cttacatcatatccacctaaactgcaattctctg |
351 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2368918 |
cttacatcatatccatctaaattgcaattctctg |
2368885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 2363472 - 2363139
Alignment:
| Q |
18 |
gttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaat |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2363472 |
gttttggtgttgcttaatccaaaagtttcattcatatcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaat |
2363373 |
T |
|
| Q |
118 |
gcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatg |
217 |
Q |
| |
|
||| ||||||||| || ||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2363372 |
gcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaatatctttatg |
2363273 |
T |
|
| Q |
218 |
ggtagtaagaaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttcctttt |
317 |
Q |
| |
|
|| |||||||||| ||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||| |
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|
| T |
2363272 |
cgttgtaagaaacctctccggtttgaatactaatggatctgaccaaacattaggatcagtgtgaatcttccaaagattcaaaattaatcgtgttccattt |
2363173 |
T |
|
| Q |
318 |
cttacatcatatccacctaaactgcaattctctg |
351 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| |
|
|
| T |
2363172 |
cttacatcatatccacctaaattacaattctctg |
2363139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 2351839 - 2351508
Alignment:
| Q |
20 |
tttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgc |
119 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||| | || | || |||||||| ||| |||||||||||||||||||| || | ||| |||||| |
|
|
| T |
2351839 |
tttggtgtttgctaatccaaattcttcagtcatatcaacaagtccgggtgttggatttaagatatcaaaggaatgcaaaaaacttgctagagtgaaatgc |
2351740 |
T |
|
| Q |
120 |
accatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatggg |
219 |
Q |
| |
|
|| |||||||| ||||| || ||| | || || | |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2351739 |
acaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggtagtagttcaaaatgattacctctaacatcaacaactttatgag |
2351640 |
T |
|
| Q |
220 |
tagtaagaaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttct |
319 |
Q |
| |
|
| |||||||||| ||||||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2351639 |
tggtaagaaacctttctggtttgaactctaatggatctgaccaaacactaggatcagtttgaatcttccaaagatttagcattaaccgagttccttttct |
2351540 |
T |
|
| Q |
320 |
tacatcatatccacctaaactgcaattctctg |
351 |
Q |
| |
|
|||| || ||||| | | |||||||||||| |
|
|
| T |
2351539 |
aacatggtaaccaccaatagtgcaattctctg |
2351508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 2340372 - 2340110
Alignment:
| Q |
34 |
atccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggcc |
133 |
Q |
| |
|
||||||| | |||| ||||||||| || ||| || |||||||| ||| ||||||||||||||||||||||| | || ||||||| ||||||||| || |
|
|
| T |
2340372 |
atccaaaggcttcactcatatcaacagcatcaggtgttggatttaagatatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtcc |
2340273 |
T |
|
| Q |
134 |
aaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgc |
233 |
Q |
| |
|
||| || ||||| || || | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||| ||||| |
|
|
| T |
2340272 |
aaacgatattccaggacatttccttctaccacttccaaatggtaatagttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctt |
2340173 |
T |
|
| Q |
234 |
tctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagattt |
296 |
Q |
| |
|
||||||||||| || |||||||||| ||||||| | ||||| || |||||||||||||||||| |
|
|
| T |
2340172 |
tctggtttgaactctaatggatctggccaaacactaggatctgtttgaatcttccaaagattt |
2340110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 24 - 349
Target Start/End: Complemental strand, 2307701 - 2307376
Alignment:
| Q |
24 |
gtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcacca |
123 |
Q |
| |
|
||||| ||||||||||| | |||| ||||||||| | ||||| | |||||||| ||| ||||||||||||||||||||||| | | | ||||||| || |
|
|
| T |
2307701 |
gtgtttgttaatccaaaggattcactcatatcaacaagttcaggggttggatttaagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagca |
2307602 |
T |
|
| Q |
124 |
tttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagt |
223 |
Q |
| |
|
||||||| |||| ||| ||||| ||||| || |||||||||| ||||||||| |||||| |||||| | |||| |||||||||||||||||||| || || |
|
|
| T |
2307601 |
tttgaagtccaagtgatattccagggcatatccttctaccacttccaaatggcaatagcacaaaattactacccctaacatcaacatctttatgagtggt |
2307502 |
T |
|
| Q |
224 |
aagaaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttaca |
323 |
Q |
| |
|
|||||| | ||||||||||| || |||||||||| ||||| ||| ||||| |||| |||| ||||||||||| ||||| || ||||| ||| | ||| |
|
|
| T |
2307501 |
aagaaatctttctggtttgaactctaatggatctggccaaatattaggatccgtgttaatcctccaaagatttgtgattaatcgagttccctttataaca |
2307402 |
T |
|
| Q |
324 |
tcatatccacctaaactgcaattctc |
349 |
Q |
| |
|
| ||| || |||||| | |||||||| |
|
|
| T |
2307401 |
tgataacctcctaaagtacaattctc |
2307376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 296
Target Start/End: Original strand, 2261160 - 2261413
Alignment:
| Q |
43 |
tttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacat |
142 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||| ||||||||||| || |||||| |||||||||||||||| | ||| ||||| ||||| || || |
|
|
| T |
2261160 |
tttcagtcatatcaacaggttcactagatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatat |
2261259 |
T |
|
| Q |
143 |
tcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttg |
242 |
Q |
| |
|
|||||| || || |||||||||| |||||||||||| | ||||||||| | ||| | ||||||||| ||| || || |||||||| | ||||||||| |
|
|
| T |
2261260 |
tcctggacatatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacatttttgtgagtggtaagaaatctttctggtttg |
2261359 |
T |
|
| Q |
243 |
aattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagattt |
296 |
Q |
| |
|
|| || |||||||||| ||||| | ||||||| || ||||| |||||||||||| |
|
|
| T |
2261360 |
aactctaatggatctggccaaatacttggatcggtttgaattttccaaagattt |
2261413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 2358127 - 2357839
Alignment:
| Q |
48 |
gtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctg |
147 |
Q |
| |
|
|||||||||||||| ||||| |||| || | ||||||||| |||||||||||| |||||||| ||||||||| ||||| || ||||| || ||| | | |
|
|
| T |
2358127 |
gtcatatcaataggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcag |
2358028 |
T |
|
| Q |
148 |
ggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattc |
247 |
Q |
| |
|
| ||||| |||||||||| |||||||||||| | |||||| ||| |||| ||||||||||||||||| || ||||||| | |||||||| || | |
|
|
| T |
2358027 |
gacaaatccttctaccacttccaaatggtaacaactcaaagtgacaccctcgaacatcaacatctttataagtgttaagaaatctttctggtttaaactt |
2357928 |
T |
|
| Q |
248 |
caatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccaccta |
336 |
Q |
| |
|
|||||||| ||||||||||| | || || || || |||||||||||||| |||| || ||||||||| | |||||||| ||||||| |
|
|
| T |
2357927 |
taatggatccgaccaaacattatggtctgtttggattttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
2357839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 289
Target Start/End: Original strand, 14711303 - 14711465
Alignment:
| Q |
127 |
gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaag |
226 |
Q |
| |
|
||||| |||| || ||||| || || || ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
14711303 |
gaagggcaaaggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaag |
14711402 |
T |
|
| Q |
227 |
aaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttcca |
289 |
Q |
| |
|
||| | ||| |||||||| ||||||||||| | ||||||| | |||||||| || |||||||| |
|
|
| T |
14711403 |
aaatctctcaggtttgaactccaatggatccggccaaacactaggatcagtttggatcttcca |
14711465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 14753374 - 14753512
Alignment:
| Q |
127 |
gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaag |
226 |
Q |
| |
|
|||||||||| || ||||| || ||||| ||||| |||| |||||||||||| | ||||||||||| ||| ||||||||||||||||||| || ||||| |
|
|
| T |
14753374 |
gaaggccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaag |
14753473 |
T |
|
| Q |
227 |
aaaccgctctggtttgaattccaatggatctgaccaaac |
265 |
Q |
| |
|
||| | | | || ||||| ||||||||||| | |||||| |
|
|
| T |
14753474 |
aaatctcccaggcttgaactccaatggatccggccaaac |
14753512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 2297470 - 2297361
Alignment:
| Q |
156 |
cttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaatggat |
255 |
Q |
| |
|
||||| |||| ||||||||| || | |||||||| | ||| | || |||||||||||| | || |||||||||| || ||||| ||||| ||||||| |
|
|
| T |
2297470 |
cttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgttagtggtaagaaacctttcaggtttaaattctaatggat |
2297371 |
T |
|
| Q |
256 |
ctgaccaaac |
265 |
Q |
| |
|
|||||||||| |
|
|
| T |
2297370 |
ctgaccaaac |
2297361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 26 - 338
Target Start/End: Complemental strand, 4306162 - 4305850
Alignment:
| Q |
26 |
gttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatt |
125 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4306162 |
gttggtgattccaaaagcttcagtcatatcaataggttcagctgatgcctttgagatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatt |
4306063 |
T |
|
| Q |
126 |
tgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaa |
225 |
Q |
| |
|
||||||||| | || |||||||| ||||| |||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||| |
|
|
| T |
4306062 |
tgaaggccataagatattcctggacaaatccttctaccacttccaaatggtaataactcaaaatgatgacccttaacatcaacacctttatgagtagtaa |
4305963 |
T |
|
| Q |
226 |
gaaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatc |
325 |
Q |
| |
|
||||||| ||||||||||| || || || ||| ||||||| || |||||||| || |||||||| ||||| | |||| | ||||||||| | ||||| |
|
|
| T |
4305962 |
gaaaccgttctggtttgaactctaaaggttctaaccaaaccttaggatcagtatggatcttccatagattcatgattagtctagttccttttttgacatc |
4305863 |
T |
|
| Q |
326 |
atatccacctaaa |
338 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
4305862 |
ataaccacctaaa |
4305850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 351
Target Start/End: Original strand, 5804108 - 5804429
Alignment:
| Q |
30 |
gttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaa |
129 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
5804108 |
gttaatccaaattcttcagtcatatcaataagttcaggtgttggatttaagatatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaa |
5804207 |
T |
|
| Q |
130 |
ggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaa |
229 |
Q |
| |
|
| ||||| | ||||| || || | |||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||||||||| || |||||||| |
|
|
| T |
5804208 |
gtccaaaacatattccaggacatttccttctaccacttccaaatggttgtagttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaa |
5804307 |
T |
|
| Q |
230 |
ccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatat |
329 |
Q |
| |
|
|| ||||| || || || ||||||| || ||||||| | |||| || || ||||||||||||||| ||||| || ||||||||| | |||| ||| |
|
|
| T |
5804308 |
cctttctggcttaaaatctaatggatttggccaaacactaagatctgtttggatcttccaaagatttgtgattaatcgagttccttttgtaacatgataa |
5804407 |
T |
|
| Q |
330 |
ccacctaaactgcaattctctg |
351 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
5804408 |
ccacctaaagtgcaattctctg |
5804429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 689 - 560
Alignment:
| Q |
127 |
gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaag |
226 |
Q |
| |
|
|||||||||| || ||||| || ||||| ||||| |||| |||||||||||| | ||||||||||| ||| ||||||||||||||||||| || ||||| |
|
|
| T |
689 |
gaaggccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaag |
590 |
T |
|
| Q |
227 |
aaaccgctctggtttgaattccaatggatc |
256 |
Q |
| |
|
||| | | | || ||||| ||||||||||| |
|
|
| T |
589 |
aaatctcccaggcttgaactccaatggatc |
560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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