View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_34 (Length: 329)
Name: NF12595_high_34
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 17782171 - 17782469
Alignment:
| Q |
19 |
ctaaagtaagagagatagaaattgaatgtacgtatcagtggacgtggctttaagataatccaaaatataacagagtggtgctataaaagagtgctactgc |
118 |
Q |
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| T |
17782171 |
ctaaagtaagagagatagaaattgaatgtacgtatcagtggacgtggctttaagataatccaaaatataaaagagtgttgctataaaagagtgctagtgc |
17782270 |
T |
|
| Q |
119 |
atgttcattatgatatgtaacgtagacatatattcannnnnnn--ctatagttcatcattagcaatgtttacaattggattattttcaacttgtaaatgt |
216 |
Q |
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| T |
17782271 |
atgttcattatgatatgtaacgtagacatatattcatttttttttctatagttcatcattagcaatgtttacaattggattattatcaacttgtaaatgt |
17782370 |
T |
|
| Q |
217 |
tttggatgcgcacagaatgtgttgtgctgacatagcttgaaactgttttggattctttgaagatatattcaagttgttgccactgttattgtgatatcc |
315 |
Q |
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| T |
17782371 |
tttggatgcgcacaaaatgtgttgtgctgacatagcttgaaactgttttggattctttgaagatatattcaagttgttgccactgttattgtgatatcc |
17782469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 42539287 - 42539322
Alignment:
| Q |
215 |
gttttggatgcgcacagaatgtgttgtgctgacatag |
251 |
Q |
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| T |
42539287 |
gttttggatgcgcacagaatgt-ttgtgctgacatag |
42539322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 1330266 - 1330231
Alignment:
| Q |
215 |
gttttggatgcgcacagaatgtgttgtgctgacatag |
251 |
Q |
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| T |
1330266 |
gttttggatgcgcacagaatgt-ttgtgctgacatag |
1330231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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