View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_4 (Length: 598)
Name: NF12595_high_4
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_4 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 598
Target Start/End: Original strand, 43818068 - 43818651
Alignment:
| Q |
19 |
catagaggctgttattagctaatgttctctaattcctttgttctatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattc |
118 |
Q |
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| T |
43818068 |
catagaggctgttattagctaatgttctctaattcctttgttctatactttagcaccatgcttagcatcatcgtgttattactgtgaagtattttaattc |
43818167 |
T |
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| Q |
119 |
ttaggagaggtagtttttggtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaat |
218 |
Q |
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| T |
43818168 |
ttaggagaggtagtttttggtgtcccgccaatatgtggcacctgttatttgtttcgcttttttcgtatttatctgcgaccggtacggctttttgtagaat |
43818267 |
T |
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| Q |
219 |
tcggcgtggataatattagctgattnnnnnnnnnnn----ggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccat |
314 |
Q |
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| T |
43818268 |
tcggcgtggataatattagctgattaaaaaaaaaaaaaaaggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccat |
43818367 |
T |
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| Q |
315 |
tgtcgcgttggtatgccttggaacatgttgctattatggtttctattccttattgagcaatgaatttaatttcacaggttgtaggcttttttatggtttc |
414 |
Q |
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| T |
43818368 |
tgtcgcgttggtatgccttggaacatgttgctattgtggtttctattccttattgagcaatgaatttaatttcacaggttgtaggcttttttatggtttc |
43818467 |
T |
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| Q |
415 |
taattctattcctcatgaaaattacatatgcataacgtttagtacttattgtgtttggtttctggttttcctgaaagtttgtggcaacaagttagttcat |
514 |
Q |
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| T |
43818468 |
taattctattcctcatgaaaattacatatgcataatgtttattacttattgtgtttggtttctggttttcctgaaagtttgtggcaacaagttagttcat |
43818567 |
T |
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| Q |
515 |
cttctttcgggtcatttggatgtgttggtgaagggggtctgttggtgatgtttaagctctttgtgcatattcttttcggatcag |
598 |
Q |
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| T |
43818568 |
cttcttttgggtcatttggatgtgctggtgaagggggtttgttggtgatgtttaagctctttgtgcatattcttttcggatcag |
43818651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 19873395 - 19873568
Alignment:
| Q |
62 |
tatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtag-tttttggtgtcccgccaatatgcggcacc |
160 |
Q |
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| T |
19873395 |
tatactttagcatcatgcttagcctatttgggtttttactgtgaagtattttaatccttgagaaaggtggttttttggtgctccgcctatatgcggtacc |
19873494 |
T |
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| Q |
161 |
tgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatat |
234 |
Q |
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| T |
19873495 |
ttttgtatgttccgctttattcgtttttatccgcgagcggtaccgcttcttgtacaactcgtcgtgaataatat |
19873568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 598
Target Start/End: Complemental strand, 21747993 - 21747941
Alignment:
| Q |
547 |
gggggtctgtt-ggtgatgtttaagctctttgtgcatattcttttcggatcag |
598 |
Q |
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| T |
21747993 |
gggggtctgtttggtgatgtttaagttttttgtgcatcttcttttcgtatcag |
21747941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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