View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_high_43 (Length: 274)

Name: NF12595_high_43
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_high_43
NF12595_high_43
[»] chr7 (23 HSPs)
chr7 (101-178)||(30391251-30391328)
chr7 (101-178)||(47644814-47644891)
chr7 (101-180)||(27070556-27070635)
chr7 (101-180)||(27207678-27207757)
chr7 (101-180)||(17500802-17500881)
chr7 (101-180)||(17552333-17552412)
chr7 (102-179)||(31436523-31436599)
chr7 (101-177)||(5724143-5724219)
chr7 (102-178)||(49089053-49089129)
chr7 (101-179)||(36186782-36186860)
chr7 (102-180)||(21153158-21153236)
chr7 (101-157)||(16567405-16567461)
chr7 (101-157)||(16598201-16598257)
chr7 (102-149)||(18067843-18067890)
chr7 (101-139)||(31009568-31009606)
chr7 (101-179)||(46651777-46651855)
chr7 (1-31)||(48383356-48383386)
chr7 (101-178)||(12141989-12142066)
chr7 (102-179)||(36920891-36920968)
chr7 (194-242)||(22754088-22754136)
chr7 (101-149)||(23761172-23761220)
chr7 (101-149)||(24267565-24267613)
chr7 (101-149)||(44196131-44196179)
[»] chr5 (21 HSPs)
chr5 (101-179)||(33743221-33743299)
chr5 (101-180)||(27340974-27341053)
chr5 (101-180)||(34952292-34952371)
chr5 (102-179)||(18638729-18638806)
chr5 (101-181)||(42825219-42825299)
chr5 (101-172)||(21062887-21062958)
chr5 (101-179)||(30301315-30301393)
chr5 (101-178)||(3722965-3723042)
chr5 (101-177)||(39840593-39840669)
chr5 (101-180)||(20125495-20125574)
chr5 (104-178)||(8725307-8725379)
chr5 (102-180)||(12878841-12878919)
chr5 (101-147)||(42807413-42807459)
chr5 (101-181)||(31024891-31024971)
chr5 (102-178)||(3155108-3155184)
chr5 (101-181)||(4878160-4878240)
chr5 (102-178)||(36415951-36416027)
chr5 (102-177)||(32425058-32425133)
chr5 (101-179)||(33567127-33567205)
chr5 (101-138)||(25255357-25255394)
chr5 (101-138)||(25319147-25319184)
[»] chr3 (22 HSPs)
chr3 (101-179)||(11233919-11233997)
chr3 (102-180)||(18713709-18713787)
chr3 (101-179)||(35425560-35425638)
chr3 (101-179)||(42424336-42424414)
chr3 (102-179)||(22153970-22154047)
chr3 (101-180)||(622346-622425)
chr3 (101-177)||(47509037-47509113)
chr3 (101-178)||(44334690-44334767)
chr3 (117-178)||(43176316-43176377)
chr3 (101-177)||(26668945-26669021)
chr3 (102-181)||(40159712-40159791)
chr3 (101-179)||(23920402-23920480)
chr3 (101-178)||(39932248-39932325)
chr3 (111-179)||(4208116-4208184)
chr3 (103-170)||(37323774-37323841)
chr3 (102-177)||(41369685-41369760)
chr3 (116-179)||(42104536-42104599)
chr3 (101-139)||(3484862-3484900)
chr3 (101-178)||(28300535-28300612)
chr3 (101-181)||(7231892-7231972)
chr3 (102-138)||(24748705-24748741)
chr3 (101-149)||(31169478-31169526)
[»] chr6 (19 HSPs)
chr6 (102-181)||(19788962-19789041)
chr6 (101-179)||(7693420-7693498)
chr6 (101-180)||(3821509-3821588)
chr6 (102-181)||(28647321-28647400)
chr6 (101-179)||(2333480-2333558)
chr6 (101-181)||(30622129-30622209)
chr6 (101-149)||(9200215-9200263)
chr6 (101-179)||(14569272-14569350)
chr6 (101-179)||(23633213-23633291)
chr6 (101-175)||(3800699-3800779)
chr6 (134-175)||(30253244-30253285)
chr6 (116-179)||(3712507-3712570)
chr6 (1-32)||(19789113-19789144)
chr6 (101-187)||(6158660-6158746)
chr6 (117-178)||(18792321-18792382)
chr6 (101-182)||(26860500-26860581)
chr6 (119-179)||(15098861-15098921)
chr6 (102-178)||(27176063-27176139)
chr6 (138-174)||(30253163-30253199)
[»] chr4 (30 HSPs)
chr4 (101-180)||(10096629-10096708)
chr4 (101-178)||(29525963-29526040)
chr4 (101-178)||(34114006-34114083)
chr4 (104-174)||(42516742-42516812)
chr4 (101-181)||(11012230-11012310)
chr4 (102-181)||(41154134-41154213)
chr4 (103-179)||(1688316-1688392)
chr4 (102-178)||(45274369-45274445)
chr4 (101-175)||(17363335-17363409)
chr4 (101-181)||(4514151-4514231)
chr4 (115-182)||(8906349-8906416)
chr4 (101-178)||(40335882-40335956)
chr4 (102-152)||(46081892-46081942)
chr4 (134-179)||(23444720-23444765)
chr4 (125-170)||(27384305-27384350)
chr4 (101-141)||(31147336-31147376)
chr4 (101-149)||(39067873-39067921)
chr4 (1-32)||(27384190-27384221)
chr4 (1-32)||(29525861-29525892)
chr4 (101-180)||(35332809-35332888)
chr4 (101-179)||(42882559-42882638)
chr4 (125-179)||(4489687-4489741)
chr4 (101-179)||(36444283-36444361)
chr4 (101-170)||(40308538-40308605)
chr4 (116-178)||(50159054-50159116)
chr4 (130-179)||(30890173-30890222)
chr4 (1-30)||(34770035-34770064)
chr4 (101-181)||(31275251-31275331)
chr4 (101-149)||(44133636-44133684)
chr4 (102-178)||(55996526-55996602)
[»] scaffold0020 (2 HSPs)
scaffold0020 (101-179)||(156011-156089)
scaffold0020 (1-32)||(155909-155940)
[»] chr1 (35 HSPs)
chr1 (101-179)||(30530287-30530365)
chr1 (101-181)||(50884656-50884736)
chr1 (101-179)||(33669711-33669789)
chr1 (101-174)||(15059729-15059802)
chr1 (101-177)||(52369001-52369077)
chr1 (101-179)||(4511665-4511743)
chr1 (101-179)||(33422107-33422185)
chr1 (101-179)||(44112559-44112637)
chr1 (101-179)||(49596346-49596424)
chr1 (101-178)||(34002209-34002286)
chr1 (102-180)||(8464400-8464478)
chr1 (101-179)||(52417636-52417714)
chr1 (102-179)||(44641791-44641868)
chr1 (101-178)||(51250180-51250257)
chr1 (101-179)||(24775080-24775158)
chr1 (101-170)||(40139218-40139287)
chr1 (130-178)||(21154357-21154405)
chr1 (101-149)||(38233378-38233426)
chr1 (102-177)||(29688876-29688951)
chr1 (101-168)||(42792388-42792455)
chr1 (101-180)||(44950308-44950387)
chr1 (101-179)||(50017311-50017389)
chr1 (101-178)||(4154687-4154764)
chr1 (129-174)||(44503547-44503592)
chr1 (107-179)||(49589860-49589932)
chr1 (2-32)||(2492417-2492447)
chr1 (101-179)||(5315316-5315394)
chr1 (1-31)||(15059642-15059672)
chr1 (101-179)||(45470727-45470805)
chr1 (1-31)||(49596238-49596268)
chr1 (102-179)||(11570251-11570328)
chr1 (101-149)||(1724152-1724200)
chr1 (101-149)||(5975642-5975690)
chr1 (152-188)||(9362908-9362944)
chr1 (115-175)||(52078540-52078600)
[»] chr2 (21 HSPs)
chr2 (101-180)||(42665699-42665778)
chr2 (101-177)||(6666125-6666201)
chr2 (101-180)||(546272-546351)
chr2 (101-178)||(10389324-10389401)
chr2 (101-178)||(11442777-11442854)
chr2 (101-179)||(7497879-7497957)
chr2 (101-180)||(42554881-42554958)
chr2 (110-162)||(16447153-16447205)
chr2 (101-144)||(40496455-40496498)
chr2 (109-178)||(2308213-2308282)
chr2 (101-178)||(35965687-35965764)
chr2 (101-178)||(36909732-36909809)
chr2 (101-172)||(305863-305935)
chr2 (1-32)||(6666023-6666054)
chr2 (1-32)||(7498028-7498059)
chr2 (130-177)||(17917523-17917570)
chr2 (101-179)||(3091846-3091924)
chr2 (1-31)||(16447284-16447314)
chr2 (133-178)||(29170752-29170797)
chr2 (101-149)||(7687857-7687905)
chr2 (146-178)||(44411038-44411070)
[»] chr8 (19 HSPs)
chr8 (106-179)||(34996248-34996321)
chr8 (102-178)||(41005870-41005946)
chr8 (101-181)||(41304868-41304948)
chr8 (101-179)||(27631052-27631130)
chr8 (101-178)||(8074614-8074691)
chr8 (101-149)||(323998-324046)
chr8 (101-181)||(7129638-7129718)
chr8 (101-179)||(11155770-11155848)
chr8 (101-179)||(29910100-29910178)
chr8 (101-179)||(42026477-42026555)
chr8 (101-144)||(5642313-5642356)
chr8 (101-144)||(5644254-5644297)
chr8 (111-178)||(11180458-11180525)
chr8 (101-144)||(45081172-45081215)
chr8 (101-179)||(23258137-23258215)
chr8 (125-178)||(40723354-40723408)
chr8 (194-243)||(32395961-32396010)
chr8 (102-182)||(39153569-39153649)
chr8 (102-178)||(40719533-40719609)
[»] scaffold0057 (1 HSPs)
scaffold0057 (101-172)||(21469-21540)
[»] scaffold0072 (1 HSPs)
scaffold0072 (101-179)||(14437-14515)
[»] scaffold0194 (1 HSPs)
scaffold0194 (101-175)||(29702-29776)
[»] scaffold0111 (1 HSPs)
scaffold0111 (101-178)||(36757-36834)
[»] scaffold0154 (1 HSPs)
scaffold0154 (107-175)||(4425-4493)
[»] scaffold0238 (1 HSPs)
scaffold0238 (105-179)||(16500-16574)
[»] scaffold0024 (3 HSPs)
scaffold0024 (101-146)||(60572-60617)
scaffold0024 (1-32)||(60472-60503)
scaffold0024 (102-174)||(92054-92126)
[»] scaffold0504 (1 HSPs)
scaffold0504 (101-139)||(10663-10701)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-31)||(21483-21513)
[»] scaffold0511 (1 HSPs)
scaffold0511 (117-178)||(11759-11820)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 30391251 - 30391328
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30391251 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatcactactc 30391328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 47644814 - 47644891
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| || |||||||| |||||||||||||||||||||    
T  47644814 gttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagttataccaaataattgtacatatatcactactc 47644891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 27070635 - 27070556
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  27070635 gttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatgattgcacatatatcactactcta 27070556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 27207678 - 27207757
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  27207678 gttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatgattgcacatatatcactactcta 27207757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 17500802 - 17500881
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||| |||| ||||||| ||||||||||||||||||||||    
T  17500802 gttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactcta 17500881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 17552412 - 17552333
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||| |||| ||||||| ||||||||||||||||||||||    
T  17552412 gttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactcta 17552333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 31436523 - 31436599
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||| ||||||||||||||||  |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  31436523 ttttagaccaatgagaagagataaaatgaaagttgtcatcaaa-ttgtatcaaatggttgtacatatatcactactct 31436599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 5724143 - 5724219
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    ||||||||||||||| ||||||| ||||||||||||||||| || ||||   ||||| |||||||||||||||||||    
T  5724143 gttttggaccaatgaaaagagagaaaataaaagttgtcatccaatttgtcttaaatggttgtacatatatcactact 5724219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 49089129 - 49089053
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||   ||||  ||||||||||||||||||||    
T  49089129 ttttggaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcactactc 49089053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 36186860 - 36186782
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||| || ||||| ||||||  |||||||||||||||||||| || ||||||||| |||||||||||||| ||||||    
T  36186860 gttttgtactaatgaaaagagaacaaataaaagttgtcatcaaagttataccaaatggttgtacatatatcattactct 36186782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 21153158 - 21153236
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    |||| ||||||| | ||||||| |||| ||||||||||| ||| ||||||||||   ||||||||||||||||||||||    
T  21153158 tttttgaccaatcaaaagagagaaaatcaaagttgtcatgaaagttgtaccaaaaagttgtacatatatcactactcta 21153236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 16567405 - 16567461
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatg 157  Q
    ||||||||||||||| |||||   |||| |||||||||| |||||||||||||||||    
T  16567405 gttttggaccaatgaaaagagtacaaattaaagttgtcaacaaaattgtaccaaatg 16567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 16598257 - 16598201
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatg 157  Q
    ||||||||||||||| |||||   |||| |||||||||| |||||||||||||||||    
T  16598257 gttttggaccaatgaaaagagtacaaattaaagttgtcaacaaaattgtaccaaatg 16598201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 18067890 - 18067843
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    ||||| ||||||  ||||||||||||||||||||||||||||| ||||    
T  18067890 ttttgaaccaataggaagagagtaaataaaagttgtcatcaaagttgt 18067843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 31009606 - 31009568
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtca 139  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  31009606 gttttggaccaataggaagagagtaaataaaagttgtca 31009568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 46651777 - 46651855
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||||| ||||||| ||||| |||||||||  | ||||||| || ||| |||| || |||||||||||||    
T  46651777 gtttttgaccaatgaaaagagagaaaatagaagttgtcacaagaattgtatcatatggttgttcaaatatcactactct 46651855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 48383386 - 48383356
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  48383386 aaatgatatttgtacaaccattttattacaa 48383356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 12141989 - 12142066
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||| ||||||||| |||| || ||| |||||||||||  ||| ||||| |||||| |||| || ||||||||||||    
T  12141989 gtttttgaccaatgaaaagaaagaaaaaaaaagttgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 12142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 36920891 - 36920968
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||| ||||||| | | ||||| |||| |||||||| || ||| ||||||||||   |||||||||||||||||||||    
T  36920891 tttttgaccaatcaaatgagagaaaatcaaagttgtaataaaagttgtaccaaagagttgtacatatatcactactct 36920968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 22754088 - 22754136
Alignment:
Q  194 tgttgtcgtcttgcaaaatttggtgctcaaccgagtggatgtgtgatca 242  Q
    |||||||||| |||||||| | ||| |||||||||||||| ||||||||    
T  22754088 tgttgtcgtcatgcaaaatctagtgttcaaccgagtggatatgtgatca 22754136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 23761172 - 23761220
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    ||||||||| |||  |||||||||||||||||||||| |||||| ||||    
T  23761172 gttttggactaataggaagagagtaaataaaagttgttatcaaagttgt 23761220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 24267613 - 24267565
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||   || ||||||||||||||||||||||||| ||||    
T  24267613 gttttggaccaatagaaaaagagtaaataaaagttgtcatcaaagttgt 24267565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 44196179 - 44196131
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||   ||||| |||||||||||||||||||||| ||||    
T  44196179 gttttggaccaatagaaagagcgtaaataaaagttgtcatcaaagttgt 44196131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 33743299 - 33743221
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33743299 gttttggatcaatgagaagagagcaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatcactactct 33743221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 27340974 - 27341053
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27340974 gttttggaccaataaaaagagagcaaatgaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 27341053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 34952371 - 34952292
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| || | |||||| |||||||||||||||||||||||    
T  34952371 gttttggaccaataagaagagagaaaataaaagttgtcatcaaagttatcccaaataattgtacatatatcactactcta 34952292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 18638806 - 18638729
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||||| |||| |||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  18638806 ttttggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 18638729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 42825219 - 42825299
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||| ||||  |||||||||||||||||    
T  42825219 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaatggttgtcaatatatcactactctat 42825299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 21062887 - 21062958
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatca 172  Q
    ||||||| ||||| |||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  21062887 gttttgggccaataagaaaagagcaaatgaaagttgtcatcaaaattgtaccaaatggttgtacatatatca 21062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 30301315 - 30301393
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| ||||  || ||| |||||||||||||||||||||    
T  30301315 gttttggacaaatgagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatcactactct 30301393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 3723042 - 3722965
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||| | ||||||| |||| ||||||||||||||| |||| ||||||| |||||||||||||| |||||    
T  3723042 gttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcattactc 3722965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 39840669 - 39840593
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    ||||||||||||||||||||| | |||||||||||||||||||| || |  |||||  |||||||||||||||||||    
T  39840669 gttttggaccaatgagaagagggaaaataaaagttgtcatcaaagttatcacaaatagttgtacatatatcactact 39840593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 20125495 - 20125574
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||||||  ||||| ||||||||| ||||||    
T  20125495 gtttttgaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatagttgtatatatatcaccactcta 20125574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 8725379 - 8725307
Alignment:
Q  104 ttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||| |||| |||| |||| ||||||||||||||| |||| ||||||| ||||  ||||||||||||||    
T  8725379 ttggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgt--atatatcactactc 8725307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 12878841 - 12878919
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    |||||||||||||| || ||||||||||||| || | |||||| || ||| ||||| |||||||| ||||| |||||||    
T  12878841 ttttggaccaatgaaaaaagagtaaataaaaattatgatcaaagttatactaaatggttgtacatgtatcattactcta 12878919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 42807413 - 42807459
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaatt 147  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||    
T  42807413 gttttggaccaataaaaagagagaaaataaaagttgtcatcaaaatt 42807459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 31024971 - 31024891
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt-accaaatgattgtacatatatcactactctat 181  Q
    |||||| |||||||||||||||  |||| ||||||||| ||||| || | ||||| ||| ||||||||||||||||||||||    
T  31024971 gttttgaaccaatgagaagagaaaaaatgaaagttgtcgtcaaagttatcaccaattga-tgtacatatatcactactctat 31024891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 3155108 - 3155184
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||| |||| |||| |||| ||||||||||| ||| ||||   | ||||||||||| ||||||||||||    
T  3155108 ttttggaccaataagaatagagaaaatgaaagttgtcattaaagttgtcatatatgattgtacaaatatcactactc 3155184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 4878240 - 4878160
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    |||||||||||||   || ||||||||||||||||||||||||| ||||   | ||| ||||||| ||||||| |||||||    
T  4878240 gttttggaccaatagaaatagagtaaataaaagttgtcatcaaagttgttagatatggttgtacaaatatcacaactctat 4878160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 36416027 - 36415951
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||| ||||||| | ||||||| |||  ||||||||||| ||| ||||||||||   ||||||||||||||||||||    
T  36416027 tttttgaccaatcaaaagagagaaaaccaaagttgtcatgaaagttgtaccaaagagttgtacatatatcactactc 36415951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 32425058 - 32425133
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    |||| ||||||| | |||| || |||| ||||||||||| ||| |||||||||||  |||||||||| ||||||||    
T  32425058 tttttgaccaatcaaaagatagaaaattaaagttgtcatgaaagttgtaccaaatagttgtacatatgtcactact 32425133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 33567205 - 33567127
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||||| ||||||| ||| | || ||||||  ||| ||||| |||||| |||| ||||||||||||||||    
T  33567205 gtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatcactactct 33567127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 25255357 - 25255394
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtc 138  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  25255357 gttttggaccaataagaatagagtaaataaaagttgtc 25255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 25319147 - 25319184
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtc 138  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  25319147 gttttggaccaataagaatagagtaaataaaagttgtc 25319184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 11233997 - 11233919
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  11233997 gttttggatcaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatggttgtacatatatcagtactct 11233919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 18713709 - 18713787
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||||||||||  ||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  18713709 ttttggaccaatgagaagagagagaatgaaagttgtcattaaaattgttccaaatggttgtacatatatcactactcta 18713787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 35425638 - 35425560
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||| |||||||||||||| |||| |||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  35425638 gttttggatcaatgagaagagagcaaatgaaagttgtcatcaaagatgtaccaaatgattatacatatatcactactct 35425560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 42424336 - 42424414
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  42424336 gttttggagcaatgagaagagaataaatgaaagttgtcatcaaagttgtaccaaatggatgtacatatatcactactct 42424414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 22153970 - 22154047
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||||||| ||||||| |||| ||||||||||| ||| |||||||||||| ||||||| |||||||||||||    
T  22153970 ttttggaccaatgaaaagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtacaaatatcactactct 22154047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 622425 - 622346
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |||||| ||||  ||||||||||||||||    
T  622425 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactcta 622346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 47509113 - 47509037
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    ||||||||||||| |||| |||  |||||||| ||||||||||| ||||| |||||| |||||||||||||||||||    
T  47509113 gttttggaccaataagaaaagaacaaataaaaattgtcatcaaagttgtatcaaatggttgtacatatatcactact 47509037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 44334767 - 44334690
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||||||||||| |||||||| |||||| |||| ||||  |||||| ||||  ||||||||||||||    
T  44334767 gttttggaccaatgagaagagagaaaataaaaattgtcaacaaagttgtcacaaatggttgtcaatatatcactactc 44334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 43176316 - 43176377
Alignment:
Q  117 aagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||| ||||||||||| |||||||| ||||| |||||| ||||| ||||||||||||||    
T  43176316 aagagagcaaataaaagttatcatcaaagttgtatcaaatggttgtatatatatcactactc 43176377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26668945 - 26669021
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    ||||||||||||||| ||  ||| |||| ||||||||||||| | |||| | ||||| |||||||||||||||||||    
T  26668945 gttttggaccaatgaaaaatgagaaaatgaaagttgtcatcatagttgtcctaaatggttgtacatatatcactact 26669021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 40159791 - 40159712
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    |||| ||||||| | ||||||| |||  ||||||||||| ||| ||||||||||   |||||||||||||||||||||||    
T  40159791 tttttgaccaatcaaaagagagaaaaccaaagttgtcatgaaagttgtaccaaagagttgtacatatatcactactctat 40159712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 23920402 - 23920480
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||||||  ||||||||||||||||| ||||||| ||| ||||  || ||| ||||||| ||||||| |||||    
T  23920402 gttttggaccaataggaagagagtaaataaaaattgtcattaaagttgttacatatggttgtacaaatatcacaactct 23920480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 39932248 - 39932325
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||| ||||||||||| |||| ||||||||||||||| |||| ||||   ||||||||||   |||||||||||||    
T  39932248 gttttgaaccaatgagaaaagagaaaataaaagttgtcaacaaagttgtcaaaaatgattgtcagtatatcactactc 39932325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 4208184 - 4208116
Alignment:
Q  111 aatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||| || |||| ||||||||||  ||||||||  || ||| |||||||||||||||||||||    
T  4208184 aatgagaagaaagaaaatgaaagttgtcaataaaattgtcacagatggttgtacatatatcactactct 4208116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 37323774 - 37323841
Alignment:
Q  103 tttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatat 170  Q
    ||||||||||| ||||| ||| |||| ||| ||||||||||| |||| ||||||  ||||||||||||    
T  37323774 tttggaccaataagaagggagaaaatgaaaattgtcatcaaagttgtcccaaatagttgtacatatat 37323841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 41369685 - 41369760
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    |||| ||||||| | ||||||| |||  ||||||||||| ||| ||||||||||  | ||||||||||||||||||    
T  41369685 tttttgaccaatcaaaagagagaaaactaaagttgtcataaaagttgtaccaaagaagtgtacatatatcactact 41369760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 42104536 - 42104599
Alignment:
Q  116 gaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||||| ||| ||||  || ||| ||||||| ||||||| |||||    
T  42104536 gaagagagtaaataaaagttgtcattaaagttgttacatatggttgtacaaatatcacaactct 42104599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 3484862 - 3484900
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtca 139  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  3484862 gttttggaccaatgagaagagagaaaatgaaagttgtca 3484900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 28300612 - 28300535
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||| ||||||||| ||||||| |||||||||||||||  | | ||||| || ||| |||| || ||||||||||||    
T  28300612 gtttttgaccaatgaaaagagagaaaataaaagttgtcacaagagttgtatcatatggttgttcaaatatcactactc 28300535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 7231972 - 7231892
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||| ||||||||| ||||||| ||| | || ||||||  ||| ||||| |||||| |||| || |||||||||||||||    
T  7231972 gtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactctat 7231892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 24748705 - 24748741
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtc 138  Q
    |||||||||||||||||||||| |||| |||||||||    
T  24748705 ttttggaccaatgagaagagagaaaatgaaagttgtc 24748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31169526 - 31169478
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||  ||||||||| |||| |||| ||||||||||||||||||||    
T  31169526 gttttgggtcaatgagaatagagaaaatgaaagttgtcatcaaaattgt 31169478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 19789041 - 19788962
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    |||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||| |||||||||||||||||||||||    
T  19789041 ttttggaccaatgagaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctat 19788962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 7693420 - 7693498
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||    
T  7693420 gttttggaccaataagaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatcactactct 7693498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 3821509 - 3821588
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    |||||||| |||||||||||||  |||||||| ||||||||||| || |||||||||| |||||||||||||||||||||    
T  3821509 gttttggatcaatgagaagagaacaaataaaaattgtcatcaaagttataccaaatgaatgtacatatatcactactcta 3821588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 28647400 - 28647321
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    |||||||||||||||||||||  |||| |||||||||| |||| ||||||||||||  ||||||||||||||||||||||    
T  28647400 ttttggaccaatgagaagagaacaaattaaagttgtcaacaaagttgtaccaaatggatgtacatatatcactactctat 28647321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 2333480 - 2333558
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||| ||| ||||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  2333480 gttttggactaataagaagagagaaaataaaaattgtcatcaaaattgtttcaaatgattgtacatatatcagtactct 2333558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 30622129 - 30622209
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||||||||||| ||||||||  |||| ||||||||||||||| |||| ||||||  |||||||||||||||||||||||    
T  30622129 gttttggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatcactactctat 30622209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 9200215 - 9200263
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  9200215 gttttggaccaataggaagagagtaaataaaagttgtcatcaaagttgt 9200263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 14569272 - 14569350
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||| |||||||  ||||||| || |||||||| || |  |||||| |||||| ||||||||||||||    
T  14569272 gttttggaccaatgaaaagagagataataaaatttatcatcaaagttatctcaaatggttgtacgtatatcactactct 14569350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 23633291 - 23633213
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||||||   ||||| ||||  ||||||||| |||||    
T  23633291 gttttggaccaatgaaaaaagagaaaataaaagttgtcaacaaaattgtcagaaatggttgtcaatatatcaccactct 23633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 3800699 - 3800779
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaa------attgtaccaaatgattgtacatatatcacta 175  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||       |||| ||||||| |||||||||||||||||    
T  3800699 gttttggaccaatgagaagagagaaaatgaaagttgtcaacaaagttgtcgttgtcccaaatggttgtacatatatcacta 3800779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 30253285 - 30253244
Alignment:
Q  134 ttgtcatcaaaattgtaccaaatgattgtacatatatcacta 175  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  30253285 ttgtcatcaaaattgtcccaaatgattctacatatatcacta 30253244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 3712570 - 3712507
Alignment:
Q  116 gaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||||| ||||||||   | ||| ||||||| ||||||| |||||    
T  3712570 gaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactct 3712507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 19789144 - 19789113
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  19789144 aaatgatatttgtacaaccattttattacaac 19789113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 6158746 - 6158660
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctatagaaaa 187  Q
    |||||||||||||   |||||||||||||||||||||||| ||| ||||   | ||| ||||||| ||||||| |||| ||| ||||    
T  6158746 gttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacacatatcacaactcaatacaaaa 6158660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 18792382 - 18792321
Alignment:
Q  117 aagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||||||||||| ||||||||   | ||| ||||||| ||||||| ||||    
T  18792382 aagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactc 18792321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 26860581 - 26860500
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctata 182  Q
    |||||||||||||   |||||||||||||||||||||||| ||| ||||   | ||| ||||||| ||||||| | ||||||    
T  26860581 gttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacaaatatcacaaatctata 26860500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 15098861 - 15098921
Alignment:
Q  119 gagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| |||| |||||||||||  || ||||||||||  |||||||||||||||| |||||    
T  15098861 gagagaaaatcaaagttgtcatagaagttgtaccaaaaaattgtacatatatcacaactct 15098921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 27176063 - 27176139
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||| |||||| || |||| ||||||||||| |||  |||  ||||| ||| |||| ||||||||||||    
T  27176063 ttttggaccaataagaagaaagcaaatgaaagttgtcattaaagatgtcacaaattattttacaaatatcactactc 27176139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 30253199 - 30253163
Alignment:
Q  138 catcaaaattgtaccaaatgattgtacatatatcact 174  Q
    |||||||||||| |||||||||| |||||||||||||    
T  30253199 catcaaaattgtcccaaatgattctacatatatcact 30253163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 10096708 - 10096629
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||| ||||    
T  10096708 gttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagttgtaccaaatggctgtacatatatcactattcta 10096629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 29525963 - 29526040
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||||||||||  |||| |||||||||| ||||||| |||||||||  |||||||||||||||||||    
T  29525963 gttttggaccaatgagaagagaacaaattaaagttgtcaacaaaattataccaaatggatgtacatatatcactactc 29526040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 34114083 - 34114006
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||| ||||||||| |||| ||||||  ||||||| |||| ||||||||||||||||||||||||||||    
T  34114083 gttttggaccaataagaagagagaaaatgaaagttaccatcaaagttgttccaaatgattgtacatatatcactactc 34114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 42516742 - 42516812
Alignment:
Q  104 ttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcact 174  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||  |||||| ||||||||||||||||    
T  42516742 ttggaccaatgagaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatcact 42516812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 11012230 - 11012310
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    |||| |||||||| |||| |||| |||| ||||||||||||||| ||||  || |||||||||||||||||||||||||||    
T  11012230 gtttcggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcacatatgattgtacatatatcactactctat 11012310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 41154134 - 41154213
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||||||||||||| | ||||  ||| ||| ||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  41154134 ttttggaccaatgaggaaagagccaatgaaaattgtcatcaaagttgtatcaaatggttgtacatatatcactactctat 41154213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 1688392 - 1688316
Alignment:
Q  103 tttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||  |||||| ||||  |||||||||||||||    
T  1688392 tttggaccaatgagaagagagaaaataaaagttgtgaataaaattgtcacaaatggttgtcaatatatcactactct 1688316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 45274369 - 45274445
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||| ||||||| |||| | ||||||||||||| |||| ||||||  ||||||||||||||| ||||    
T  45274369 ttttggaccaatgaaaagagagaaaatgagagttgtcatcaaagttgtcccaaatagttgtacatatatcaccactc 45274445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 17363335 - 17363409
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcacta 175  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||| |||||  ||||| || |||| |||||||||    
T  17363335 gttttggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtataaaatggttttacaaatatcacta 17363409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 4514231 - 4514151
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| ||||    |||  ||||||||||||||| |||||||    
T  4514231 gttttggaccaatgagaagagagaaaatgaaaattgtcatcaaagttgtcatgaatagttgtacatatatcaccactctat 4514151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 8906416 - 8906349
Alignment:
Q  115 agaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctata 182  Q
    ||||||||| |||| ||| ||||||||||||||||  || ||| |||||||||||||| |||||||||    
T  8906416 agaagagagaaaatgaaaattgtcatcaaaattgtcacatatggttgtacatatatcattactctata 8906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 40335882 - 40335956
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||| |||||||||| |||||| |||| ||||||||||||||| ||||  |||   |||||||||||||||||||||    
T  40335882 gttttagaccaatgaggagagagaaaatgaaagttgtcatcaaagttgtctcaa---attgtacatatatcactactc 40335956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 46081892 - 46081942
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtacc 152  Q
    |||||||||||||||||||||| |||| ||||||||| | |||||||||||    
T  46081892 ttttggaccaatgagaagagagcaaatgaaagttgtcgttaaaattgtacc 46081942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 23444765 - 23444720
Alignment:
Q  134 ttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| |||||||| | |||||||||||||||||||||||||||||    
T  23444765 ttgtcttcaaaattattccaaatgattgtacatatatcactactct 23444720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 27384305 - 27384350
Alignment:
Q  125 aaataaaagttgtcatcaaaattgtaccaaatgattgtacatatat 170  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||    
T  27384305 aaataaaagttgtcatcaaaattgtcacaaatgattgtacacatat 27384350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 31147336 - 31147376
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatc 141  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  31147336 gttttggaccaataagaagagagaaaataaaagttgtcatc 31147376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 39067921 - 39067873
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||   |||||||||||||||||||||||||||| ||||    
T  39067921 gttttggaccaatagaaagagagtaaataaaagttgtcatcaaagttgt 39067873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 27384190 - 27384221
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  27384190 aaatgatatttgtacaaccattttattacaac 27384221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 29525861 - 29525892
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  29525861 aaatgatatttgtacaaccattttattacaac 29525892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 35332809 - 35332888
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||| ||||| ||| ||||||| |||||| |||| |||||||| ||||  | |||| | ||||||||||||||||||||    
T  35332809 gtttttgaccagtgaaaagagagaaaataatagttatcatcaaagttgtcaccaatggtggtacatatatcactactcta 35332888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 42882559 - 42882638
Alignment:
Q  101 gttttggaccaatgagaa-gagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||| |||||||| ||||  |||| ||| ||||||||||| ||||  || ||| |||||||||||||||||||||    
T  42882559 gttttggactaatgagaaagagaaaaaatgaaaattgtcatcaaagttgtcacacatggttgtacatatatcactactct 42882638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 4489741 - 4489687
Alignment:
Q  125 aaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||| ||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  4489741 aaattaaagttgtcatgaaagttgtaccaaagagttgtacatatatcactactct 4489687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 36444361 - 36444283
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||||| || |||| ||||| |||||||||  | ||||||| || |||||||| || |||||||||||||    
T  36444361 gtttttgaccaatgaaaaaagagaaaatagaagttgtcacaagaattgtatcatatgattgttcaaatatcactactct 36444283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 40308538 - 40308605
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatat 170  Q
    ||||||||||||| | ||||||| | || ||||||||||||||||||||  || | ||||||||||||||    
T  40308538 gttttggaccaataaaaagagagaacatgaaagttgtcatcaaaattgt--cacaagattgtacatatat 40308605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 50159054 - 50159116
Alignment:
Q  116 gaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||||||||||||| ||| ||||  || ||| ||||||| ||||||| ||||    
T  50159054 gaagagagtaaataaaagttgtcattaaagttgttacatatggttgtacaaatatcacaactc 50159116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 30890222 - 30890173
Alignment:
Q  130 aaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||| ||||||||||||||   |||||||||||||||| ||||    
T  30890222 aaagttgtcataaaaattgtaccaaagagttgtacatatatcactgctct 30890173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34770035 - 34770064
Alignment:
Q  1 aaatgatatttgtacaaccattttattaca 30  Q
    ||||||||||||||||||||||||||||||    
T  34770035 aaatgatatttgtacaaccattttattaca 34770064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 31275251 - 31275331
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||| ||||||||| ||||||| ||| | || ||||||  ||| ||||| |||||| |||| || |||||||||||||||    
T  31275251 gtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactctat 31275331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 44133636 - 44133684
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||  |||||||||||||||||||| |||| ||| ||||    
T  44133636 gttttggaccaataggaagagagtaaataaaagttatcattaaagttgt 44133684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 55996526 - 55996602
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||| ||||||| | |||| || ||||  |||||||||| | ||||||||||||   ||||||||||||||||||||    
T  55996526 tttttgaccaatcaaaagatagaaaattgaagttgtcattataattgtaccaaaaagttgtacatatatcactactc 55996602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 156011 - 156089
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  156011 gttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 156089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 155909 - 155940
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  155909 aaatgatatttgtacaaccattttattacaac 155940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 30530365 - 30530287
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  30530365 gttttggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 30530287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 50884736 - 50884656
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||||||| |||||||||| || |||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  50884736 gttttggactaatgagaagatagcaaatgaaagttttcatcaaagttgtaccaaatggttgtacatatatcactactctat 50884656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 33669789 - 33669711
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||  |||| | ||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  33669789 gttttggaccaatgagaagagaaaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 33669711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 15059729 - 15059802
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcact 174  Q
    ||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||| |||||||    
T  15059729 gttttggacaaatgagaagagagaaaatgaaaattgtcatcaaaattgtcccaaatgattgtacatgtatcact 15059802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 52369077 - 52369001
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    |||||||||||||||||| |||| |||| ||||||||||||||| |||||| ||||  |||||||||||||||||||    
T  52369077 gttttggaccaatgagaatagagcaaatgaaagttgtcatcaaagttgtactaaatagttgtacatatatcactact 52369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 4511743 - 4511665
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||  |||| |||||||||||| || |||| ||||||| |||||||||||||| ||||||    
T  4511743 gttttggaccaatgagaagagaaaaaatgaaagttgtcatctaagttgtcccaaatggttgtacatatatcattactct 4511665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 33422185 - 33422107
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |||||| ||||  |||||||||||||||    
T  33422185 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 33422107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 44112559 - 44112637
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |||||| ||||  |||||||||||||||    
T  44112559 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 44112637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 49596346 - 49596424
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||  ||| |||| |||||| |||||||| |||||||||||| |||||||||||||| ||||||    
T  49596346 gttttggaccaatgagaatggagcaaattaaagttatcatcaaagttgtaccaaatggttgtacatatatcattactct 49596424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 34002286 - 34002209
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||| ||||||||| |||| |||||||| |||||| |||| ||||||  ||||||||||||||||||||    
T  34002286 gttttggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactc 34002209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 8464478 - 8464400
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    |||||||||||| | ||||||| |||| ||||||||||||||| |||  |||| || ||||||||||||||||||||||    
T  8464478 ttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttggcccaagtggttgtacatatatcactactcta 8464400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 52417636 - 52417714
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||| |||| ||||||  ||||| |||||||||||||||    
T  52417636 gttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgttccaaatagttgtatatatatcactactct 52417714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 44641868 - 44641791
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||||||||||||||| ||||||||||||||| |||| || |  |||||| ||||  |||||||||||||||    
T  44641868 ttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttatcacaaatggttgtcaatatatcactactct 44641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 51250257 - 51250180
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||| || |||| ||||||||| |||||||||||||||||||| || |  ||||||||||||||||||||| |||||    
T  51250257 gttttagatcaataagaagagagaaaataaaagttgtcatcaaagttatttcaaatgattgtacatatatcagtactc 51250180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 24775080 - 24775158
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||| |||||||| |||||| |||| ||||   ||||| ||||  |||||||||||||||    
T  24775080 gttttggaccaatgagaagagagaaaataaaaattgtcaacaaagttgtcaaaaatggttgtcaatatatcactactct 24775158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 40139218 - 40139287
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatat 170  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| ||||  |||||  ||||||||||||    
T  40139218 gttttggacaaatgagaagagagaaaatgaaagttgtcatcaaacttgtcacaaatagttgtacatatat 40139287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 21154357 - 21154405
Alignment:
Q  130 aaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  21154357 aaagttgtcatcaaagttgtatcaaatggttgtacatatatcactactc 21154405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 38233378 - 38233426
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  38233378 gttttggaccaataggaagagagtaaataaaagttgtcattaaaattgt 38233426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 29688876 - 29688951
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    |||||||||||||||||||    |||| ||||||||||||||||| || | ||||| ||||||||| |||||||||    
T  29688876 ttttggaccaatgagaagaagaaaaatgaaagttgtcatcaaaatcgtcctaaatggttgtacataaatcactact 29688951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 42792388 - 42792455
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatat 168  Q
    |||||||| |||| | |||||| ||||||||| ||||||||||| |||||  ||||||||||||||||    
T  42792388 gttttggatcaataaaaagagaataaataaaaattgtcatcaaagttgtataaaatgattgtacatat 42792455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 44950387 - 44950308
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    |||||||| ||||  ||||||||||||||||||||||||| ||||||||  || ||  ||||||| ||||||| ||||||    
T  44950387 gttttggatcaataggaagagagtaaataaaagttgtcattaaaattgttacatatagttgtacaaatatcacaactcta 44950308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 50017389 - 50017311
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||| ||||||| || | |||||| ||| |||| ||||  |||||| |||||||||||||| ||||||    
T  50017389 gttttggaccaatgaaaagagagaaattgaaagttatcaacaaagttgtctcaaatggttgtacatatatcagtactct 50017311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 4154687 - 4154764
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| ||||   | ||| ||||||| ||||||| ||||    
T  4154687 gttttggaccaataagaagagagtaaataaaagttatcattaaagttgttagatatgtttgtacaaatatcacaactc 4154764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 44503592 - 44503547
Alignment:
Q  129 aaaagttgtcatcaaaattgtaccaaatgattgtacatatatcact 174  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||    
T  44503592 aaaagttgtcatcaaagttgtatcaaatgattgtacatatgtcact 44503547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 49589932 - 49589860
Alignment:
Q  107 gaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||  |||||  || |  |||||||||||||||    
T  49589932 gaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatagttatcaatatatcactactct 49589860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 2492417 - 2492447
Alignment:
Q  2 aatgatatttgtacaaccattttattacaac 32  Q
    |||||||||||||||||||||||||||||||    
T  2492417 aatgatatttgtacaaccattttattacaac 2492447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 5315316 - 5315394
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||| |||||| |||| |||| |||| ||||| ||||||||| ||||   ||||| ||||||||||| |||||||||    
T  5315316 gttttgaaccaataagaaaagagaaaatgaaagtcgtcatcaaagttgtctaaaatggttgtacatatagcactactct 5315394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15059642 - 15059672
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  15059642 aaatgatatttgtacaaccattttattacaa 15059672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 45470805 - 45470727
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||| ||||||||| |||| |||||||| |||||| || | ||||||  ||||| || |||| |||||||    
T  45470805 gttttggaccaataagaagagagaaaatgaaagttgtgatcaaagtttttccaaatagttgtaaatttatcgctactct 45470727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 49596238 - 49596268
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  49596238 aaatgatatttgtacaaccattttattacaa 49596268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 11570328 - 11570251
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||| ||||||| | ||||||| | | |||||||||||| ||| |||||| |||   |||||||||||||||||||||    
T  11570328 tttttgaccaatcaaaagagagaagacaaaagttgtcatgaaagttgtacgaaagagttgtacatatatcactactct 11570251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 1724200 - 1724152
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||  |||||||||||||||||||||  |||||| ||||    
T  1724200 gttttggaccaataggaagagagtaaataaaagttgcgatcaaagttgt 1724152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 5975642 - 5975690
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    |||||||||||||   |||||||||||||||||||||||| ||| ||||    
T  5975642 gttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgt 5975690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 9362944 - 9362908
Alignment:
Q  152 caaatgattgtacatatatcactactctatagaaaaa 188  Q
    |||||| |||||||||||||||||||||||| |||||    
T  9362944 caaatggttgtacatatatcactactctataaaaaaa 9362908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 52078540 - 52078600
Alignment:
Q  115 agaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcacta 175  Q
    ||||||||| |||| |||||| |||||||| |||| | ||||  |||||||||||||||||    
T  52078540 agaagagagaaaatgaaagttatcatcaaagttgttcaaaatagttgtacatatatcacta 52078600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 42665778 - 42665699
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||| || |||| |||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  42665778 gttttggaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatcactactcta 42665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 6666125 - 6666201
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||||||| |  |||||||||||||    
T  6666125 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaatgattatcaatatatcactact 6666201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 546351 - 546272
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |||||| ||||  ||||||||||||||||    
T  546351 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactcta 546272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 10389324 - 10389401
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||||||||||| || | ||||| |||| |||| |||| ||||||| ||||||||||||||||||||    
T  10389324 gttttggaccaatgagaagagagaaagtgaaagtcgtcaccaaagttgtcccaaatggttgtacatatatcactactc 10389401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 11442777 - 11442854
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||| ||||||  |||| |||||||||| |||| ||||||||||||  |||||||||||||||||||    
T  11442777 gttttggaccaatgaaaagagaacaaattaaagttgtcaacaaagttgtaccaaatggatgtacatatatcactactc 11442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 7497957 - 7497879
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||| |||||||||||||||| ||||||||||||||| |||| ||||  |||||| ||||  |||||||||||||||    
T  7497957 gttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 7497879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 42554881 - 42554958
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactcta 180  Q
    ||||||||||||||  ||||||  |||| |||||||| |||||| |||||||||||| |||||| |||||||||||||||    
T  42554881 gttttggaccaatggaaagaga--aaatgaaagttgttatcaaagttgtaccaaatggttgtacttatatcactactcta 42554958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 16447205 - 16447153
Alignment:
Q  110 caatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgt 162  Q
    |||||||||||||| |||| |||||| ||||||||||||| ||||||||||||    
T  16447205 caatgagaagagaggaaatgaaagttatcatcaaaattgttccaaatgattgt 16447153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 40496455 - 40496498
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaa 144  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  40496455 gttttggaccaataggaagagagtaaataaaagttgtcatcaaa 40496498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 2308282 - 2308213
Alignment:
Q  109 ccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||| |||| ||||||||||||||| ||||   | ||| ||||||| ||||||||||||    
T  2308282 ccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcatatatggttgtacaaatatcactactc 2308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 35965687 - 35965764
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||| ||||||||||| |||| || |||||||| |||||||| || |   ||||| ||||||||||||||||||||    
T  35965687 gttttgaaccaatgagaatagagaaagtaaaagttatcatcaaagttctcataaatggttgtacatatatcactactc 35965764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 36909809 - 36909732
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||| ||||||| ||||||||| |||  ||||||||||||||| |||||  |||||  |||||| ||||||||||||    
T  36909809 gtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatggatgtacaaatatcactactc 36909732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 305935 - 305863
Alignment:
Q  101 gttttggaccaatgagaagagagt-aaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatca 172  Q
    ||||| ||||||| |||||||||  ||| |||||||||||| || |||||||||||||||||| || ||||||    
T  305935 gttttcgaccaataagaagagagagaaaaaaaagttgtcataaagattgtaccaaatgattgttcaaatatca 305863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6666023 - 6666054
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  6666023 aaatgatatttgtacaaccattttattacaac 6666054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7498059 - 7498028
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  7498059 aaatgatatttgtacaaccattttattacaac 7498028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 17917523 - 17917570
Alignment:
Q  130 aaagttgtcatcaaaattgtaccaaatgattgtacatatatcactact 177  Q
    |||||||| || ||||||||| |||| |||||||||||||||||||||    
T  17917523 aaagttgttataaaaattgtatcaaaagattgtacatatatcactact 17917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 3091846 - 3091924
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||||| ||||||| ||| | |||||||||  ||| ||||| ||||| ||||| || |||||||||||||    
T  3091846 gtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactct 3091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16447314 - 16447284
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  16447314 aaatgatatttgtacaaccattttattacaa 16447284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 29170797 - 29170752
Alignment:
Q  133 gttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||||  ||||||||| ||||||||||| |||||    
T  29170797 gttgtcatcaaaattgtctcaaatgattatacatatatcattactc 29170752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 7687857 - 7687905
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    ||||| ||||||||||||||||| ||||||||||| ||| |||| ||||    
T  7687857 gttttagaccaatgagaagagagaaaataaaagttatcaacaaagttgt 7687905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 44411070 - 44411038
Alignment:
Q  146 ttgtaccaaatgattgtacatatatcactactc 178  Q
    |||| ||||||||||||||||||||||||||||    
T  44411070 ttgtcccaaatgattgtacatatatcactactc 44411038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 34996321 - 34996248
Alignment:
Q  106 ggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||| ||||||| |||| ||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  34996321 ggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtaccaaatagttgtacatatatcactactct 34996248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 41005870 - 41005946
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||| ||||| |||||||||||||||    
T  41005870 ttttggaccaatgagaagagagaaaataaaagttatcatctaaattatcccaaataattgtgcatatatcactactc 41005946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 41304948 - 41304868
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||  |||||  ||||  |||||||||||||||||    
T  41304948 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaattgttgtcaatatatcactactctat 41304868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 27631052 - 27631130
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||||| ||||||| |||||| ||||||||||||| ||||  | |||| |||||||||||||||||||||    
T  27631052 gtttttgaccaatgaaaagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcactactct 27631130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 8074691 - 8074614
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||| |||||| ||||||||| |||| ||||||||||||||| ||||   | ||||||||||||||||||||||||    
T  8074691 gttttgaaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcaaatatgattgtacatatatcactactc 8074614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 324046 - 323998
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgt 149  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  324046 gttttggaccaataagaagagagtaaataaaagttgtcatcaaagttgt 323998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 7129638 - 7129718
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctat 181  Q
    ||||| ||||||| ||||||||| |||  ||||||||||||||| |||||  |||||| |||||| |||||||||||||||    
T  7129638 gtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatgaatgtacaaatatcactactctat 7129718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 11155848 - 11155770
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||| ||||| || |||  |||||||||||||||||||| ||||  |||||| || ||||||||||||||||||    
T  11155848 gttttggactaatgaaaaaagaaaaaataaaagttgtcatcaaagttgtcacaaatggttctacatatatcactactct 11155770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 29910178 - 29910100
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||| |||||||||||||||| ||||||||||||||| |||| ||||   ||||| ||||  |||||||||||||||    
T  29910178 gttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaaaaatggttgtcaatatatcactactct 29910100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 42026477 - 42026555
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||| | ||||||| |||||| ||||||||||||||||||  | ||||||| ||||||||| ||||||||    
T  42026477 gtttttgaccaataaaaagagagaaaataatagttgtcatcaaaattgtcaccaatgattatacatatattactactct 42026555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 5642356 - 5642313
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaa 144  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  5642356 gttttggaccaataagaagagagaaaataaaagttgtcatcaaa 5642313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 5644297 - 5644254
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaa 144  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  5644297 gttttggaccaataagaagagagaaaataaaagttgtcatcaaa 5644254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 11180458 - 11180525
Alignment:
Q  111 aatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||  |||| |||||||||| |||| ||||||||||||  |||||||| ||||||||||    
T  11180458 aatgagaagagaacaaattaaagttgtcaccaaagttgtaccaaatggatgtacatacatcactactc 11180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 45081172 - 45081215
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaa 144  Q
    |||||||| ||||  |||||||||||||||||||||||||||||    
T  45081172 gttttggatcaataggaagagagtaaataaaagttgtcatcaaa 45081215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 23258137 - 23258215
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||| ||||||||| ||||||| ||| | |||||||||  ||||||||  |||||| |||| || |||||||||||||    
T  23258137 gtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatcactactct 23258215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 40723408 - 40723354
Alignment:
Q  125 aaataaaagttgtcatcaaaattgt-accaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||| |||||||| | |||||||||||||| |||||| |||||    
T  40723408 aaataaaagttgtcataaaaattgtcatcaaatgattgtacaaatatcattactc 40723354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 32395961 - 32396010
Alignment:
Q  194 tgttgtcgtcttgcaaaatttggtgctcaaccgagtggatgtgtgatcag 243  Q
    |||||||||| |||||||| |  |||||||||||||||| ||||||||||    
T  32395961 tgttgtcgtcgtgcaaaatctattgctcaaccgagtggacgtgtgatcag 32396010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 39153649 - 39153569
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctata 182  Q
    |||| ||||||| | ||||||| |||| |||||| |||| ||| || ||| |||   ||||||||||||||||||||||||    
T  39153649 tttttgaccaatcaaaagagagaaaatcaaagttatcatgaaagttatactaaagagttgtacatatatcactactctata 39153569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 40719609 - 40719533
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||| ||||||| | ||||||| |||  ||||||||||| ||| |||||| |||   ||||||||||||||||||||    
T  40719609 tttttgaccaatcaaaagagagaaaaccaaagttgtcataaaagttgtacgaaagagttgtacatatatcactactc 40719533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 21540 - 21469
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatca 172  Q
    ||||||||||||||||||||||| |||| |||||||| |||||| ||||  |||||||||||||||||||||    
T  21540 gttttggaccaatgagaagagagaaaatgaaagttgttatcaaagttgtcacaaatgattgtacatatatca 21469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 14515 - 14437
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    ||||||||||||||||||||||  |||| ||| |||||| |||| ||||||||||||  ||||||||||||||||||||    
T  14515 gttttggaccaatgagaagagaacaaattaaaattgtcaacaaagttgtaccaaatggatgtacatatatcactactct 14437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 29776 - 29702
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcacta 175  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||| |||| |||||||||| || ||| |||||||    
T  29776 gttttggaccaatgaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatgattatatatacatcacta 29702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 36834 - 36757
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||   ||||||||||  |||||||| |||||    
T  36834 gttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaaaaatgattgtcaatatatcaatactc 36757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 4425 - 4493
Alignment:
Q  107 gaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcacta 175  Q
    ||||||||| ||||||| |||||| ||||||||||||| ||||  | |||| |||||||||||||||||    
T  4425 gaccaatgaaaagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcacta 4493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 16500 - 16574
Alignment:
Q  105 tggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 179  Q
    |||||||||||||| |||| ||||||||||||||| |||| ||||   ||||| ||||  |||||||||||||||    
T  16500 tggaccaatgagaatagagaaaataaaagttgtcaacaaagttgtcataaatggttgtcaatatatcactactct 16574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 60572 - 60617
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaaat 146  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||    
T  60572 gttttggaccaatgaaaagagagaaaatgaaagttgtcatcaaaat 60617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 60472 - 60503
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  60472 aaatgatatttgtacaaccattttattacaac 60503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 92054 - 92126
Alignment:
Q  102 ttttggaccaatgagaagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcact 174  Q
    |||| ||||||| | ||||||| ||| |||| ||||||| ||||||||| ||||   ||||||||||||||||    
T  92054 tttttgaccaatcaaaagagagaaaacaaaaattgtcataaaaattgtatcaaagagttgtacatatatcact 92126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 10701 - 10663
Alignment:
Q  101 gttttggaccaatgagaagagagtaaataaaagttgtca 139  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  10701 gtttttgaccaatgagaagagagaaaataaaagttgtca 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 21513 - 21483
Alignment:
Q  1 aaatgatatttgtacaaccattttattacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  21513 aaatgatatttgtacaaccattttattacaa 21483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 11759 - 11820
Alignment:
Q  117 aagagagtaaataaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactc 178  Q
    |||||||||||||||||||||||| ||||||||   | ||| ||||||| ||||||| ||||    
T  11759 aagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactc 11820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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