View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_5 (Length: 575)
Name: NF12595_high_5
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 6 - 559
Target Start/End: Complemental strand, 28336533 - 28335984
Alignment:
| Q |
6 |
aggagcacagacatctcagaactttgaaaaacccacacaagtcactcacnnnnnnnctctctaaaatctacggaccaatcatgacactaaaacttggcaa |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28336533 |
aggaccacacacatctcagaactttgaaaaacccacacaagtcactcacaaaaaaactctctaaaatctacggaccaatcatgacactaaaacttggcaa |
28336434 |
T |
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| Q |
106 |
cataacatccatagtaatctcatccccacaactaaccaaacaagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttaga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28336433 |
cataacatccatagtaatctcatccccacaactaaccaaacaagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttaga |
28336334 |
T |
|
| Q |
206 |
tattggcgaggttgtttatagcgccaacaaaaatgtcacaagtgcatatcataatcagcaccataaagtcaaattctttgtttatagcaccacaaaccat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28336333 |
tattggcgaggttgtttatagcgccaacaaaaatgtcacaagtgcatatcataatcagcaccataaagtcaaattctttgtttatagcaccacaaaccat |
28336234 |
T |
|
| Q |
306 |
tttggggaacgagaaaaaaggcacaatatccactaaactgcgcactaaggatcatatcaacagaccgaccactatgagcaggaggagggtgaagttgaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28336233 |
tttggggaacgagaaaaaaggcacaatatccactaaactgcgcactaaggatcatatcaaca----gaccactatgagcaggaggagggtgaagttgaat |
28336138 |
T |
|
| Q |
406 |
gtgtaggatcttctgagcaa-ggagttatcatgtacaatgtaaaattagtcgagagagggctcgtcactttaggccacaatgttcggctaattttgcata |
504 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28336137 |
gtgtaggatcttctgagcaagggagttatcatgtacaatgtaaaattagtcgagagagggctcgtcactttaggccacaatgttcggctaa-tttgcata |
28336039 |
T |
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| Q |
505 |
atttttgctataaaatactcggttcatacactataatagacacactcgatcaatc |
559 |
Q |
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| T |
28336038 |
atttttgctataaaatactcggttcatacactataatagacacactcgatcaatc |
28335984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 28321214 - 28321125
Alignment:
| Q |
62 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacataacatccatagtaatctcatccccacaactaaccaaacaagtt |
151 |
Q |
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||||| |||||||| ||||||||||||||| ||||||| || | ||||||| ||||||| ||||| ||||||||| || ||||||||||| |
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| T |
28321214 |
ctctcaaaaatctatggaccaatcatgacattaaaactaggaagcataacaaccatagtgatctcttccccacaagtagccaaacaagtt |
28321125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 28331737 - 28331605
Alignment:
| Q |
16 |
acatctcagaactttg-aaaaacccacacaagtcactcacnnnnnnnctctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacat |
113 |
Q |
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|||||| ||||||| | ||||||||||||||| ||||||| ||||| |||| ||| ||||||||||||||| ||||||| || ||||| |||| |
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| T |
28331737 |
acatcttagaacttggcaaaaacccacacaaggcactcacaaaa---ctctcaaaaacctatggaccaatcatgacattaaaactagg-aacattaacaa |
28331642 |
T |
|
| Q |
114 |
ccatagtaatctcatccccacaactaaccaaacaagt |
150 |
Q |
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| T |
28331641 |
ccatagtaatctcatcaccacaactagccaaacaagt |
28331605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 28310640 - 28310551
Alignment:
| Q |
62 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacatccatagtaatctcatccccacaactaaccaaacaagtt |
151 |
Q |
| |
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||||| || ||||| |||||||| |||||||||||||| || ||||| |||| |||||||||||||||| || |||||| ||||||||||| |
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| T |
28310640 |
ctctcaaacatctatggaccaattatgacactaaaactagg-aacattaacaaccatagtaatctcatcacctcaactagccaaacaagtt |
28310551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 28297137 - 28297065
Alignment:
| Q |
77 |
ggaccaatcatgacactaaaacttggcaacataacatccatagtaatctcatccccacaactaaccaaacaag |
149 |
Q |
| |
|
||||||||||||||||||||||| || | |||||| |||||||||| ||||| |||||| || ||||||||| |
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| T |
28297137 |
ggaccaatcatgacactaaaactaggaacaataacaaccatagtaatttcatctccacaagtagccaaacaag |
28297065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 28296876 - 28296801
Alignment:
| Q |
147 |
aagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattggcgaggttgttt |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||||| |||| ||||| |
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| T |
28296876 |
aagttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtttttgatattggtgaggctgttt |
28296801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 28288061 - 28288150
Alignment:
| Q |
62 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacatccatagtaatctcatccccacaactaaccaaacaagtt |
151 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||||| || ||||| |||| |||||||||| ||||| |||||| || ||||||||||| |
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| T |
28288061 |
ctctcaaacatctatggaccaattatgacactaaaactagg-aacattaacaaccatagtaatttcatcaccacaattagccaaacaagtt |
28288150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 28320938 - 28320874
Alignment:
| Q |
147 |
aagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattgg |
211 |
Q |
| |
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||||||||||||||||| ||||| ||||||| |||| | |||||||||| ||||| |||||||| |
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| T |
28320938 |
aagttgcaagaattattagattatgtgaatgaaaaaagtaacaaaggtgaggtttttgatattgg |
28320874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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