View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_high_60 (Length: 223)
Name: NF12595_high_60
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 42817657 - 42817838
Alignment:
| Q |
25 |
aagtattagaaaaagaaaaccaaacgtttttaatggttgatttccatgtgaaattatgccatgcaccactctatgattaattaattatctatcaagtata |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42817657 |
aagtattagaaaaagaaaaccaaacgtttttaatggttgatttccatgtgaaattatgtcatgcaccactctatgattaattaattatctatcaagtata |
42817756 |
T |
|
| Q |
125 |
taaattaaaatggtgtttctttattgaggaggcatgacagcattgtttttaatacttggtatataaattttaattcgatcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42817757 |
taaattaaaatggtgtttctttattgaggtggcatgacagcattgtttttaatacttggtatataaatttcaattcgatcat |
42817838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 42807278 - 42807456
Alignment:
| Q |
28 |
tattagaaaaagaaaaccaaacgtttttaatggttgatttccatgtgaaattatgccatgcaccactctatgattaattaattatctatcaagtatataa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42807278 |
tattagaaaaagaaaaccaaacgtttttaatggttgatttccatgtgaaattatgtcatgcaccactctatgattaattaattatctatcaagtatataa |
42807377 |
T |
|
| Q |
128 |
attaaaatggtgtttctttattgaggaggcatgacagcattgtttttaatacttggtatataaattttaattcgatcat |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42807378 |
attaaaatggtgtttctttattgaggtggcatgacagcattgtttttaatacttggtatataaatttcaattcgatcat |
42807456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University