View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_high_8 (Length: 516)
Name: NF12595_high_8
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 31708785 - 31709278
Alignment:
| Q |
1 |
accttaacaacatcgtcaaactcatcagaaggagaaattggtggactatctgttcctgttaaagaaccaccatttaatggttcactgctatgagacaatc |
100 |
Q |
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| T |
31708785 |
accttaacaacatcgtcaaactcatcagaaggagaaattggtggactatctgttcctgttaaagaaccaccatttaatggttcactgctatgagacaatc |
31708884 |
T |
|
| Q |
101 |
tacctgatgttaatggagacacttcctgttacataaaacaaactttaaaaccaaaaccttaaaaagaataacaatgtctcaaactagtaaataacttgca |
200 |
Q |
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| T |
31708885 |
tacctgatgttaatggagacacttcctgttacataaaacaaactttaaaaccaaaaccttaaaaagaataacaatgtctcaaactagtaaataacttgca |
31708984 |
T |
|
| Q |
201 |
tttgtttttccacaactcttttactacctctcttgcggattgtgacatgatacgttcaaggacaagctgtgaagtagttgaagtagcaaaagagaattga |
300 |
Q |
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| T |
31708985 |
tttgtttttccacaactcttttactacctctcttgcggattgtgacatgatacgttcaaggacaagctgtgaagtagttgaagtagcaaaagagaattga |
31709084 |
T |
|
| Q |
301 |
tttccacacatgtttgagaattcttgagaaagagtactagtaatagtttcttcaggaatagagttagtagaagccttagaaggaggaggaggggttggtg |
400 |
Q |
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| T |
31709085 |
tttccacacatgtttgagaattcttgagaaagag---tagtaatagtttcttcaggaatagagttagtagaagccttagaaggaggaggagggggtggtg |
31709181 |
T |
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| Q |
401 |
gttgaggtgacaatgctttagagacctcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctctggcaaacgtgt |
497 |
Q |
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| T |
31709182 |
gttgaggtgacaatgctttagagacctcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctctggcaaacgtgt |
31709278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38268207 - 38268073
Alignment:
| Q |
1 |
accttaacaacatcgtcaaactcatcagaaggagaaattggtggactatctgttcctgttaaagaac---caccatttaatggttcactgctatgagaca |
97 |
Q |
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||||| |||||||||||||| ||||| ||| |||||||||| ||| |||||||| ||||| |||| ||||||| || ||||| ||||| ||||| | |
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| T |
38268207 |
accttgacaacatcgtcaaattcatctgaatgagaaattgg---actgtctgttccagttaatgaactgccaccattcaaaggttcgctgctgtgagata |
38268111 |
T |
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| Q |
98 |
atctacctgatgttaatggagacacttcctgttacata |
135 |
Q |
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| T |
38268110 |
atctacctgatgttaacggagacacttcctgttacata |
38268073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 485
Target Start/End: Complemental strand, 38267811 - 38267753
Alignment:
| Q |
427 |
tcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctc |
485 |
Q |
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|||| |||||| ||||||||||||||||| ||||||||||| || | || ||||||||| |
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| T |
38267811 |
tcaagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctc |
38267753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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