View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_1 (Length: 801)
Name: NF12595_low_1
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 501 - 777
Target Start/End: Original strand, 11197419 - 11197695
Alignment:
| Q |
501 |
aggaaatgatttcttgtgaagtgttatttttgttgttcttcctttctgtttacacaattgattttatatctttatgttagatggaaaacatggtagttgt |
600 |
Q |
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| T |
11197419 |
aggaaatgatttcttgtgaagtgttatttttgttgttcttcctttctgtttacacaattgattttatatctttatgttagatggaaaacatggtagttgt |
11197518 |
T |
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| Q |
601 |
gatgttaagttacataacatgtggatgtggatccttatcatgtgtgtgtggggtgagatttgagagtaaggtgcaagtcatctagccatagttttggagt |
700 |
Q |
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| T |
11197519 |
gatgttaagttacataacatgtggatgtggatccttatcatgtgtgtgtggggtgagatttgagagtaaggtgcaagtcatctagccatagttttggagt |
11197618 |
T |
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| Q |
701 |
taggcttgtactttattttgttttgacaaaggcttgtaatttattttattcaactcggtttgtgtgaatgtgaaaga |
777 |
Q |
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| T |
11197619 |
taggcttgtactttattttgttttgacaaaggcttgtaatttattttattcaactcggtttgtgtgaatgtgaaaga |
11197695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 121 - 333
Target Start/End: Original strand, 11197005 - 11197217
Alignment:
| Q |
121 |
actgctacttcaacttttcaaacacttcctttgcatacaaatggtactcgtgaaggtttaagtttcaatcttgggaacaccgtgccccacatggacccta |
220 |
Q |
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| T |
11197005 |
actgctacttcaacttttcaaacacttcctttgcatacaaatggtactcgtgaaggtttaagtttcaatcttgggaacaccgtgccccacatggacccta |
11197104 |
T |
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| Q |
221 |
tgcttcttcctcttcagggttctaagaaaccttataggtatgtttcnnnnnnnnnnnattcattttgttgcttttgttttcaataaggcaacactttctt |
320 |
Q |
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| T |
11197105 |
tgcttcttcctcttcagggttctaagaaaccttataggtatgtttctttttttttttattcattttgttgcttttgttttcaataaggcaacactttctt |
11197204 |
T |
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| Q |
321 |
attttgtataacc |
333 |
Q |
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| T |
11197205 |
attttgtataacc |
11197217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 11197251 - 11197299
Alignment:
| Q |
333 |
cagagtttggtcaagtctggtcaagaattgttctaatcagaacttgcta |
381 |
Q |
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| T |
11197251 |
cagagtttggtcgagtctggtcaagaattgttctaatcagaacttgcta |
11197299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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