View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_11 (Length: 512)
Name: NF12595_low_11
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 309 - 512
Target Start/End: Original strand, 27685108 - 27685311
Alignment:
| Q |
309 |
ttgcatagtcaatgacttaataattaataaagaaaacaagggcagttgcatcaatattgtacaccacaaaatcccgaacctagacaacagattcataccc |
408 |
Q |
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| T |
27685108 |
ttgcatagtcaatgacttaataattaataaagaaaacaagggcagttgcatcaatactgtaccccacaaaatcccgaacctagacaacagattcataccc |
27685207 |
T |
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| Q |
409 |
tcattttcatggtgcttaatttgctgcttannnnnnngagcctgttaagagggaaattggccaaataagaagttaagaatcaaaggatcaatcagttttt |
508 |
Q |
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| T |
27685208 |
tcattttcacggtgcttaatttgctgcttatttttttgagcctgttaagagggaaattggccaaataagaagttaagaatcaaaggatcaatcagttttt |
27685307 |
T |
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| Q |
509 |
gaac |
512 |
Q |
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|||| |
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| T |
27685308 |
gaac |
27685311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 27684109 - 27684210
Alignment:
| Q |
19 |
agaaacagaatgataagatatgtgtgtattataactattattcattgtaattgatgaacatagaagctatacaatgaaaaatattacaattccagagtca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27684109 |
agaaacagaatgataagatatgtgtgtattataactatt---cattgtaaatgatgaacatagaagctatacaatgaaaaatattacaattccagagtca |
27684205 |
T |
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| Q |
119 |
gagac |
123 |
Q |
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||||| |
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| T |
27684206 |
gagac |
27684210 |
T |
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