View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_13 (Length: 492)
Name: NF12595_low_13
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 40106464 - 40106926
Alignment:
| Q |
19 |
gattgtcagtgtaaaatctcattacacttgcaatgtatatgaattaaatcctaattataatagtttcatattttatagctttcttggttttccaaaataa |
118 |
Q |
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| T |
40106464 |
gattgtcagtgtaaaatctcattacacttgcaatgtatatgaattaaatcctaattataat-gtttcatattttatagctttcttggttttccaaaataa |
40106562 |
T |
|
| Q |
119 |
ccaaataaagtcttctgatatgatattatgctgaatagattttttaggtaacactctcttacccttgtttgtatgtgctatgaatgatatacatatcaag |
218 |
Q |
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| T |
40106563 |
caaaataaagtcttctgatatgatattatgctgaatagattttttaggtaacactctcttacccttgtttgtatgtgctatgaatgatatacatatcaag |
40106662 |
T |
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| Q |
219 |
gaaaaggcgaatgaaaaattgatcttatgtttggaatagctgtgatttgnnnnnnnnnnnngctgcaggtcggaacggttgcttttgtgtctctatcagg |
318 |
Q |
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| T |
40106663 |
gaaaaggcgaatgaaaaattgatcttatgtttggaatagctgtgatttgttttttctttttgctgcaggtcgggacggttgcttttgtgtctctatcagg |
40106762 |
T |
|
| Q |
319 |
gctgcttgtatttatgcttttctttctgaccgcgaccgtaaatgccattgttatatcgcttctgatatcattagctgcagctggagggttcttggctctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40106763 |
actgcttgtatttatgcttttctttctgaccgcgaccgtaaatgccattgttatatcgcttctgatatcattagctgcagctggagggttcttggctatt |
40106862 |
T |
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| Q |
419 |
ttctttgcttgtgctacttctatatacattggagcactctcaatagccatatttgtgatctctg |
482 |
Q |
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| T |
40106863 |
ttctttgcttgtgctacttctatatacattggagcactctcaatagccatatttgtgatctctg |
40106926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 26100655 - 26100766
Alignment:
| Q |
371 |
atatcgcttctgatatcattagctgcagctggagggttcttggctcttttctttgcttgtgctacttctatatacattggagcactctcaatagccatat |
470 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
26100655 |
atatcgcttctgatatcattagccgcaactggagggttctcggctcttttctttgtttgtgctactgctatatacattggagcactctcatcagccatat |
26100754 |
T |
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| Q |
471 |
ttgtgatctctg |
482 |
Q |
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||||||| |||| |
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| T |
26100755 |
ttgtgatttctg |
26100766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 409 - 482
Target Start/End: Complemental strand, 20595457 - 20595384
Alignment:
| Q |
409 |
cttggctcttttctttgcttgtgctacttctatatacattggagcactctcaatagccatatttgtgatctctg |
482 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
20595457 |
cttggctcttttctttgcttgttctactgctatatacattggagcattctcaacaaccatatttgtgatctctg |
20595384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 36085448 - 36085381
Alignment:
| Q |
302 |
tttgtgtctctatcagggctgcttgtatttatgcttttctttctgaccgcgaccgtaaatgccattgt |
369 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36085448 |
tttgtgtctctaacaggattgcttgtatttatgcttttctttctgaccgcgaccgtaaacgccattgt |
36085381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 1315310 - 1315376
Alignment:
| Q |
82 |
tttcatattttatagcttt-cttggttttccaaaataaccaaataaagtcttctgatatgatattat |
147 |
Q |
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|||||| ||||||| |||| ||||||||||||||||||| ||||||||| |||| |||||||||||| |
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| T |
1315310 |
tttcatcttttataccttttcttggttttccaaaataacaaaataaagttttcttatatgatattat |
1315376 |
T |
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