View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_15 (Length: 468)
Name: NF12595_low_15
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 5395903 - 5395465
Alignment:
| Q |
16 |
atatttagcattttccttaaatgttatatatctattttgccaagtgagcttgttattgatttgttcgtttcagttccagttcgtgactcttttgtgactt |
115 |
Q |
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| T |
5395903 |
atatttagcattttccttaaatgttatatatctattttgccaagtgagcttgttattgatttgttcgtttcagttccagttcgtgactcttttgtgactt |
5395804 |
T |
|
| Q |
116 |
gttaattatagaggcaatatgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgata |
215 |
Q |
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| T |
5395803 |
gttaattatagaggcaatatgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgata |
5395704 |
T |
|
| Q |
216 |
tcaatagatttgaatgggctgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaacga |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5395703 |
tcaacagatttgaatgggctgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaatga |
5395604 |
T |
|
| Q |
316 |
atctattggtagacagcgttacacttttatgcaggtaatttttattcactacttttcaatttgattcatgttcaatgcctagatcgttactattttcttt |
415 |
Q |
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| T |
5395603 |
atctattggtagacagcgttacacttttatgcaggtaatttttattcactacttttcaatttgattcatgtttaatgcctagatcgttactattttcttt |
5395504 |
T |
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| Q |
416 |
catcgaacatagacaatatttttcgcactttatgatgtc |
454 |
Q |
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| T |
5395503 |
catcaaacatagacaatatttttcgcactttatgatgtc |
5395465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 125 - 454
Target Start/End: Complemental strand, 5391049 - 5390720
Alignment:
| Q |
125 |
agaggcaatatgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagat |
224 |
Q |
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| T |
5391049 |
agagacaatatgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagat |
5390950 |
T |
|
| Q |
225 |
ttgaatgggctgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaacgaatctattgg |
324 |
Q |
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| T |
5390949 |
ttgaatgggctgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaacgaatctattgg |
5390850 |
T |
|
| Q |
325 |
tagacagcgttacacttttatgcaggtaatttttattcactacttttcaatttgattcatgttcaatgcctagatcgttactattttctttcatcgaaca |
424 |
Q |
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| T |
5390849 |
tagacagcgttacacttttatgcaggtaatttttattcactacttttcaatttgattcatgttcaatgcctagatcgttactattttctttcatcaaaca |
5390750 |
T |
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| Q |
425 |
tagacaatatttttcgcactttatgatgtc |
454 |
Q |
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| T |
5390749 |
cagacaatatttttcccactttatgatgtc |
5390720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 50829826 - 50829736
Alignment:
| Q |
134 |
atgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagatt |
225 |
Q |
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||||||||| ||||||| ||| |||| ||||| ||||||||||||| |||||||||||| ||| |||| | ||| ||||||| || ||||| |
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| T |
50829826 |
atgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaacttgccattctgatatgaacagatt |
50829736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 50846027 - 50846117
Alignment:
| Q |
134 |
atgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagatt |
225 |
Q |
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||||||||| ||||||| ||| |||| ||||| ||||||||||||| |||||||||||| ||| |||| | ||| ||||||| || ||||| |
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| T |
50846027 |
atgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaacttgccattctgatatgaacagatt |
50846117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 135 - 358
Target Start/End: Original strand, 26245477 - 26245700
Alignment:
| Q |
135 |
tgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagatttgaatgggc |
234 |
Q |
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||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |
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| T |
26245477 |
tgcaggcgagtgataggtttaacataaattcgcaacttgaacatcttcaagctaaatacgttggaactggacatgctgatatcaacagatttgaatgggc |
26245576 |
T |
|
| Q |
235 |
tgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaacgaatctattggtagacagcgt |
334 |
Q |
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| T |
26245577 |
tgtgaatattcaacgtgatagctatgcttcatacattggccattatcctttactttcttacttttctatcgctcaaaacgaatctattggtagacagcgt |
26245676 |
T |
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| Q |
335 |
tacacttttatgcaggtaattttt |
358 |
Q |
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|||||||||||||||||||||||| |
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| T |
26245677 |
tacacttttatgcaggtaattttt |
26245700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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