View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_16 (Length: 457)
Name: NF12595_low_16
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 52 - 448
Target Start/End: Complemental strand, 32176554 - 32176147
Alignment:
| Q |
52 |
tgtatacgtatacttctaaattactaattaattgatttgtctttacacctaattcatgtttttaatgtccccattcgcgtatagttttatatacttttga |
151 |
Q |
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| T |
32176554 |
tgtatacatatactactaaattactaattaattgatttgtctttacacctaattcatgttttttatgtccccattcgcgtatagttttatatacttttga |
32176455 |
T |
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| Q |
152 |
gcaattattttgaaaagtttctattcatgcacaacaaaatatatggcgatctagatccacgattaaacggatagaagtagttggcaaaataaaataaagt |
251 |
Q |
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| T |
32176454 |
gctattattttgaaaagtttctattcatgtacaacaaaatatatggcgatctagatccacgattaaacggatagaagtagttggcaaaataaaataaaat |
32176355 |
T |
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| Q |
252 |
-----tagagttgttagatgtagattgtcttaccctgtagcaccattctcattgagtaataaataatgcatgatcttttttgaatgaaaagaataaataa |
346 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32176354 |
aaaattagagttgttagatgtagattgtcttacccggtagcaccattctcattgagtaataaataatgcatgatcttttttgaatgaaaagaataaataa |
32176255 |
T |
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| Q |
347 |
tgtattgtatgttaccctc------atggagattgagtcaatcgaaagagattagacttctacgtatatgtgcgacttatagttaaatcactttattctt |
440 |
Q |
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|||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
32176254 |
tgtattgtatgttaccgtcttatcgatggagatcgagtcaagcgaaagagattagacttctacgtatatgtgcgatttatagttaaatcaccttattctt |
32176155 |
T |
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| Q |
441 |
accctatg |
448 |
Q |
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| T |
32176154 |
accctatg |
32176147 |
T |
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