View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_low_17 (Length: 457)

Name: NF12595_low_17
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_low_17
NF12595_low_17
[»] chr3 (15 HSPs)
chr3 (19-427)||(35057872-35058281)
chr3 (182-234)||(40147885-40147937)
chr3 (179-234)||(25359606-25359661)
chr3 (179-234)||(52364049-52364104)
chr3 (139-173)||(31708221-31708255)
chr3 (199-234)||(41115414-41115449)
chr3 (190-236)||(1441424-1441470)
chr3 (179-232)||(8801990-8802043)
chr3 (181-234)||(35058359-35058412)
chr3 (181-234)||(44771692-44771745)
chr3 (141-173)||(5406973-5407005)
chr3 (181-228)||(32523374-32523422)
chr3 (141-173)||(40147834-40147866)
chr3 (199-234)||(49634091-49634127)
chr3 (179-231)||(54596819-54596871)
[»] chr1 (33 HSPs)
chr1 (139-231)||(30557505-30557605)
chr1 (139-234)||(1514341-1514446)
chr1 (141-236)||(3016158-3016263)
chr1 (181-230)||(11049252-11049301)
chr1 (175-236)||(47321935-47321995)
chr1 (138-228)||(51500830-51500915)
chr1 (139-235)||(28083870-28083976)
chr1 (181-231)||(30850433-30850483)
chr1 (181-230)||(3515820-3515869)
chr1 (181-234)||(28287370-28287423)
chr1 (181-234)||(48549046-48549099)
chr1 (179-234)||(50571282-50571337)
chr1 (181-230)||(6021806-6021855)
chr1 (139-225)||(7524120-7524216)
chr1 (181-234)||(8381964-8382017)
chr1 (182-234)||(20026199-20026251)
chr1 (180-229)||(36780149-36780199)
chr1 (183-229)||(40663015-40663061)
chr1 (181-231)||(47892422-47892472)
chr1 (141-174)||(213265-213298)
chr1 (181-234)||(7790676-7790729)
chr1 (181-234)||(10324972-10325025)
chr1 (181-226)||(27849145-27849190)
chr1 (179-236)||(34387725-34387782)
chr1 (181-234)||(37522944-37522997)
chr1 (142-174)||(213522-213554)
chr1 (141-173)||(1416205-1416237)
chr1 (181-221)||(31362239-31362279)
chr1 (181-232)||(33693020-33693072)
chr1 (141-173)||(34915135-34915167)
chr1 (179-235)||(38797661-38797717)
chr1 (57-117)||(40352493-40352553)
chr1 (143-175)||(47053471-47053503)
[»] chr7 (12 HSPs)
chr7 (184-234)||(41386852-41386902)
chr7 (181-234)||(38123700-38123753)
chr7 (193-253)||(17111836-17111896)
chr7 (183-233)||(28725088-28725138)
chr7 (139-234)||(45557363-45557468)
chr7 (181-234)||(27571860-27571913)
chr7 (181-234)||(30182330-30182383)
chr7 (141-174)||(40561742-40561775)
chr7 (179-234)||(22195862-22195917)
chr7 (183-234)||(29842087-29842138)
chr7 (200-234)||(26984533-26984567)
chr7 (143-234)||(40491576-40491677)
[»] chr6 (20 HSPs)
chr6 (180-253)||(6895983-6896056)
chr6 (141-234)||(4910906-4911009)
chr6 (174-234)||(6654117-6654177)
chr6 (183-234)||(765422-765473)
chr6 (139-234)||(16540105-16540210)
chr6 (181-234)||(5724664-5724717)
chr6 (139-234)||(25195348-25195451)
chr6 (180-250)||(31725758-31725828)
chr6 (186-234)||(7952748-7952796)
chr6 (139-234)||(3482044-3482149)
chr6 (181-234)||(1485180-1485233)
chr6 (181-234)||(30927041-30927094)
chr6 (181-236)||(852528-852583)
chr6 (179-234)||(28052947-28053002)
chr6 (139-173)||(8856376-8856410)
chr6 (185-234)||(25195848-25195897)
chr6 (181-234)||(26280603-26280656)
chr6 (69-117)||(16540241-16540289)
chr6 (141-173)||(34620955-34620987)
chr6 (141-173)||(34748392-34748424)
[»] chr4 (32 HSPs)
chr4 (144-230)||(16551959-16552053)
chr4 (137-234)||(32818350-32818457)
chr4 (179-235)||(8604654-8604710)
chr4 (179-234)||(55186994-55187049)
chr4 (179-236)||(9064227-9064284)
chr4 (179-234)||(50061660-50061715)
chr4 (175-229)||(49138791-49138845)
chr4 (183-252)||(1616371-1616439)
chr4 (179-234)||(9134608-9134663)
chr4 (181-236)||(35065059-35065114)
chr4 (139-234)||(21691194-21691299)
chr4 (139-234)||(53713543-53713648)
chr4 (181-234)||(14596687-14596740)
chr4 (181-234)||(30357510-30357563)
chr4 (181-234)||(31012773-31012826)
chr4 (199-234)||(29779106-29779141)
chr4 (181-232)||(41370044-41370095)
chr4 (179-222)||(45011884-45011927)
chr4 (183-233)||(1048716-1048766)
chr4 (181-231)||(26617469-26617519)
chr4 (181-234)||(32817486-32817540)
chr4 (139-169)||(35065136-35065166)
chr4 (181-234)||(37439143-37439196)
chr4 (181-234)||(43571476-43571529)
chr4 (141-174)||(55927754-55927787)
chr4 (139-175)||(1616457-1616493)
chr4 (77-117)||(1616523-1616563)
chr4 (93-121)||(5025588-5025616)
chr4 (199-234)||(11271589-11271625)
chr4 (181-229)||(16643981-16644029)
chr4 (139-175)||(45694681-45694717)
chr4 (139-175)||(52342023-52342059)
[»] chr8 (26 HSPs)
chr8 (139-232)||(32927892-32927995)
chr8 (181-234)||(4662937-4662990)
chr8 (181-234)||(15677850-15677903)
chr8 (139-232)||(35494990-35495093)
chr8 (179-234)||(13384686-13384741)
chr8 (175-234)||(32994270-32994329)
chr8 (179-234)||(38868496-38868551)
chr8 (179-234)||(44141082-44141137)
chr8 (139-234)||(26100128-26100233)
chr8 (139-234)||(37684403-37684508)
chr8 (181-253)||(38335895-38335967)
chr8 (179-234)||(7244633-7244688)
chr8 (181-234)||(10367993-10368046)
chr8 (139-232)||(16972046-16972149)
chr8 (181-268)||(18355882-18355970)
chr8 (177-236)||(6027079-6027138)
chr8 (181-232)||(10378232-10378283)
chr8 (177-236)||(11572488-11572547)
chr8 (179-234)||(36200164-36200219)
chr8 (200-234)||(7644562-7644596)
chr8 (139-173)||(9461520-9461554)
chr8 (79-121)||(41891804-41891846)
chr8 (141-175)||(43492221-43492255)
chr8 (181-234)||(30098908-30098961)
chr8 (362-390)||(11784697-11784725)
chr8 (139-175)||(32101140-32101176)
[»] chr5 (17 HSPs)
chr5 (181-236)||(9818730-9818785)
chr5 (179-236)||(18851114-18851171)
chr5 (179-234)||(38845441-38845496)
chr5 (182-236)||(6951340-6951394)
chr5 (139-234)||(42858106-42858211)
chr5 (179-234)||(14299328-14299383)
chr5 (179-234)||(39097244-39097299)
chr5 (143-229)||(8121547-8121633)
chr5 (181-234)||(18637282-18637335)
chr5 (179-234)||(11648080-11648135)
chr5 (179-234)||(34250383-34250438)
chr5 (139-173)||(11577603-11577637)
chr5 (187-233)||(22226276-22226322)
chr5 (185-234)||(22572442-22572491)
chr5 (181-230)||(36639939-36639988)
chr5 (19-51)||(2090190-2090222)
chr5 (184-236)||(31906255-31906307)
[»] chr2 (23 HSPs)
chr2 (181-236)||(42740973-42741028)
chr2 (183-234)||(43501123-43501174)
chr2 (181-231)||(2002729-2002779)
chr2 (139-234)||(33019138-33019243)
chr2 (181-234)||(30503207-30503260)
chr2 (139-175)||(16518845-16518881)
chr2 (181-232)||(42982544-42982595)
chr2 (177-234)||(12037059-12037116)
chr2 (139-249)||(13912770-13912890)
chr2 (66-117)||(12850727-12850778)
chr2 (199-234)||(21234577-21234612)
chr2 (139-173)||(680272-680306)
chr2 (52-106)||(22536146-22536200)
chr2 (141-170)||(1976848-1976877)
chr2 (179-236)||(3352072-3352129)
chr2 (141-174)||(15220845-15220878)
chr2 (179-236)||(31453379-31453436)
chr2 (141-174)||(40401627-40401660)
chr2 (201-234)||(43717322-43717355)
chr2 (141-173)||(8800682-8800714)
chr2 (125-173)||(9143044-9143092)
chr2 (139-175)||(11504044-11504080)
chr2 (143-171)||(42982615-42982643)
[»] scaffold0168 (2 HSPs)
scaffold0168 (179-234)||(31824-31879)
scaffold0168 (139-171)||(31900-31932)
[»] scaffold0005 (1 HSPs)
scaffold0005 (181-234)||(220638-220691)
[»] scaffold0361 (1 HSPs)
scaffold0361 (141-173)||(14098-14130)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 35058281 - 35057872
Alignment:
Q  19 gtccctccagaagtgaaaccaaacatacattaagcgtatgtttggcagtgtggtgtggagaattaaatttgttagaattgattttgtagaattgatttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  35058281 gtccctccagaagtgaaaccaaacatacattaagcgtatgtttggccgtgcggtgtggagaattaattttgatagaattgattttgtagaattgatttta 35058182  T
Q  119 gttccggactaaaaagggtatgtgtttggatacattcatgtaaaa-gtgagttgaactgtatgaaaatcaattctagaattaaaagctacaaatcctagc 217  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35058181 gttccggactaaaagtggtatgtgtttggatacattcatgtaaaaagtgagttgaactgtatgaaaatcaattctataattaaaagctacaaatcctagc 35058082  T
Q  218 ttcaagtagaatcaattatcctcgacaacaaccaaaatggcaaaatcaattttaagagtggaaccaaacatacagtagacattttgagagaccttatgga 317  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058081 ttcatgtagaatcaattatcctcaacaacaaccaaaatggcaaaatcaattctaagagtggaaccaaacatacagtagacattttgagagaccttatgga 35057982  T
Q  318 atgtccataaactttttacgtcttatttctataacccggttggaatagcttatgaaaataacttataacatatctaaacaatttaacatagaaatagctt 417  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |    
T  35057981 atgtccataaacattttacgccttatttctataactcggttggaatagcttatgaaaataacttataacttatctaaacagtttaacatagaaatagcgt 35057882  T
Q  418 atacatagtc 427  Q
    ||||| ||||    
T  35057881 atacacagtc 35057872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 40147885 - 40147937
Alignment:
Q  182 aaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||    
T  40147885 aaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaatt 40147937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 25359606 - 25359661
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| |||||| |||| |||||||| ||| ||||||||||||||||||    
T  25359606 tgaaaatcaattatagaataaaaaactacaaattctaacttcaagtagaatcaatt 25359661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 52364104 - 52364049
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| |||||| |||||||| ||||| ||||||||||||||| |||||    
T  52364104 tgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaatt 52364049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 31708221 - 31708255
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||||||||||||||||||||||||||||||||    
T  31708221 tgtgtttggatacattcatgtaaaagtgagttgaa 31708255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 41115414 - 41115449
Alignment:
Q  199 aaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41115414 aaaagctacaaattctagcttcaagtagaatcaatt 41115449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 1441424 - 1441470
Alignment:
Q  190 tctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    |||||||| |||||||||||||||||| |||||||||| || |||||    
T  1441424 tctagaatcaaaagctacaaatcctagtttcaagtagagtcgattat 1441470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 8802043 - 8801990
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaa 232  Q
    ||||||||| ||||| || ||||| ||||||||||||  |||||||||||||||    
T  8802043 tgaaaatcatttctaaaactaaaaactacaaatcctaaattcaagtagaatcaa 8801990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 35058412 - 35058359
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| |||||||  || | |||||| |||||||||||||||    
T  35058412 aaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaatt 35058359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 44771745 - 44771692
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| |||||| ||||||||||||| |||| || | ||||||||||||    
T  44771745 aaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaatt 44771692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 5407005 - 5406973
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||||||||||||||||||||| |||||    
T  5407005 tgtttggatacattcatgtaaaagtgatttgaa 5406973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 32523374 - 32523422
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagctt-caagtagaa 228  Q
    |||||||||| |||||| ||||||||||||||||| ||| |||||||||    
T  32523374 aaaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaa 32523422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 40147834 - 40147866
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||||||||||| ||||||||||||||||||    
T  40147834 tgtttggatacattaatgtaaaagtgagttgaa 40147866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 49634091 - 49634127
Alignment:
Q  199 aaaagctacaaatcctagcttcaag-tagaatcaatt 234  Q
    ||||||||||||||||||||||||| |||||||||||    
T  49634091 aaaagctacaaatcctagcttcaagttagaatcaatt 49634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 54596871 - 54596819
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatca 231  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||| || |||||    
T  54596871 tgaaaatcaattctaaaattaaaagttacaaattctaacttcaaataaaatca 54596819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 30557605 - 30557505
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta--------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    ||||||||||||||||||| ||||||||||||||||| ||        ||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  30557605 tgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtgaaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaatc 30557506  T
Q  231 a 231  Q
    |    
T  30557505 a 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 1514446 - 1514341
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaac----------tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    ||||||||||||||||||||||||| ||||||||||          ||| | |||||||||| || ||| ||||||||||||||||||||||||||||||    
T  1514446 tgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaa 1514347  T
Q  229 tcaatt 234  Q
    | ||||    
T  1514346 taaatt 1514341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 3016263 - 3016158
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    |||||||||||||||||||||||||||||||||| |||          | || |||||||||||||| ||||||||||||| |||  |||||||||||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatc 3016164  T
Q  231 aattat 236  Q
    ||||||    
T  3016163 aattat 3016158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 11049301 - 11049252
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  11049301 aaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatc 11049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 47321935 - 47321995
Alignment:
Q  175 tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||||||    
T  47321935 tgtatgaaaatcaattctagaattaaaa-ctgcaaattctagcttcaagtataatcaattat 47321995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 51500830 - 51500915
Alignment:
Q  138 atgtgtttggatacattcatgtaaaagtgagttgaactgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||  |||| |||||||||||| |||||||   ||||  ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  51500830 atgtgttaagataaattcatgtaaaattgagttg---tgta--aaaatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 28083870 - 28083976
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact----------gtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||| ||||||||||||||||| ||||||          || | ||||| |||| |||||| ||||||||||||| ||||||||||||||||    
T  28083870 tgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaa 28083969  T
Q  229 tcaatta 235  Q
    |||||||    
T  28083970 tcaatta 28083976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 30850433 - 30850483
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatca 231  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  30850433 aaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatca 30850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 3515869 - 3515820
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  3515869 aaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 28287370 - 28287423
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||    
T  28287370 aaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaatt 28287423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 48549046 - 48549099
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| | ||||||||| | ||||||||||||||||||||||    
T  48549046 aaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatcaatt 48549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 50571337 - 50571282
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||| |||| ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  50571337 tgaacatcagttctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 50571282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 6021855 - 6021806
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    |||||| ||| |||||| |||||||||| |||||||||||||||||||||    
T  6021855 aaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatc 6021806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 7524216 - 7524120
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagta 225  Q
    |||||||||| ||||| |||||||||||||||||||| ||          | ||||||||||||| ||| ||||||||||||||||| |||||||||    
T  7524216 tgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 8382017 - 8381964
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||||| || | ||||||| | ||||||||||||||||||||||    
T  8382017 aaaatcaattctagaactagaggctacaatttctagcttcaagtagaatcaatt 8381964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 20026199 - 20026251
Alignment:
Q  182 aaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||| |||||||||  || | ||||||||||||||||||||||    
T  20026199 aaatcaattctagagttaaaagcttgaatttctagcttcaagtagaatcaatt 20026251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 36780149 - 36780199
Alignment:
Q  180 gaaaatcaattctagaattaaaagctac-aaatcctagcttcaagtagaat 229  Q
    |||||||||||||| ||| ||||||||| |||||||| |||||||||||||    
T  36780149 gaaaatcaattctataatcaaaagctacaaaatcctaacttcaagtagaat 36780199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 40663015 - 40663061
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 229  Q
    |||||||||| |||| ||||||||||||| ||||||| |||||||||    
T  40663015 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 40663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 47892422 - 47892472
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatca 231  Q
    ||||||||||||||||| ||||||| ||| | ||||||| |||||||||||    
T  47892422 aaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatca 47892472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 213265 - 213298
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaac 174  Q
    ||||||||||||| ||||||||||||||||||||    
T  213265 tgtttggatacatgcatgtaaaagtgagttgaac 213298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 7790676 - 7790729
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| ||||||  ||| ||||||||| || ||||||||||||||||||    
T  7790676 aaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaatt 7790729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 10324972 - 10325025
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| |||||| ||||||||||| | ||| ||||||||||| ||||||    
T  10324972 aaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaatt 10325025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 27849190 - 27849145
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtag 226  Q
    |||||||||||||| || |||||||||| ||| |||||||||||||    
T  27849190 aaaatcaattctagtatcaaaagctacacatcgtagcttcaagtag 27849145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 34387725 - 34387782
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    |||||||||||| |||||| ||||||| ||| ||| | ||||||||| ||||||||||    
T  34387725 tgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaattat 34387782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 37522944 - 37522997
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||| || |||| || ||| | ||||||||||||||||||||||    
T  37522944 aaaatcaattctaggataaaaaactccaacttctagcttcaagtagaatcaatt 37522997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 213522 - 213554
Alignment:
Q  142 gtttggatacattcatgtaaaagtgagttgaac 174  Q
    |||||||| ||||||||||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaac 213554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 1416205 - 1416237
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||| ||||||||||||||||||||||||||    
T  1416205 tgtttgaatacattcatgtaaaagtgagttgaa 1416237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 31362239 - 31362279
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttca 221  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  31362239 aaaatcaattctagaatcaaaagctacaaattctaacttca 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 33693072 - 33693020
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaag-tagaatcaa 232  Q
    |||||||||| |||||| ||||||||||| | ||||||||||| |||||||||    
T  33693072 aaaatcaattatagaatcaaaagctacaatttctagcttcaagttagaatcaa 33693020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 34915167 - 34915135
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||| ||||||||||||||||||||||||||    
T  34915167 tgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 38797661 - 38797717
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatta 235  Q
    |||||||||||||| || ||| ||| |||||||| || ||||||||| |||||||||    
T  38797661 tgaaaatcaattcttgatttagaagttacaaatcataacttcaagtataatcaatta 38797717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 40352553 - 40352493
Alignment:
Q  57 tgtttggcagtgtggtgtggagaattaaatttgttagaattgattttgtagaattgatttt 117  Q
    |||||||  ||| |||| |||||||| | |||| ||||||||||||||| |||||||||||    
T  40352553 tgtttggttgtgcggtgaggagaattgattttgatagaattgattttgtggaattgatttt 40352493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 47053503 - 47053471
Alignment:
Q  143 tttggatacattcatgtaaaagtgagttgaact 175  Q
    |||||||||||||||||||||||||||| ||||    
T  47053503 tttggatacattcatgtaaaagtgagttaaact 47053471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 41386852 - 41386902
Alignment:
Q  184 atcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386852 atcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 41386902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 38123700 - 38123753
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  38123700 aaaatcaattctagaattagaagctacaatttctagcttcaagtagaatcaatt 38123753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 17111896 - 17111836
Alignment:
Q  193 agaattaaaagctacaaatcctagcttcaagtagaatcaattatcctcgacaacaaccaaa 253  Q
    ||||| |||||||||||||| ||||||||||||||||||||| | ||||| | ||||||||    
T  17111896 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaaccaaa 17111836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 28725088 - 28725138
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaat 233  Q
    |||||||| |||||| ||||||||||||| ||||||||||||| |||||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaat 28725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 45557468 - 45557363
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaac----------tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||||||||||||||||||||||||| |          ||| | ||||||||| |||||||||||||||||| || |||||||| || | ||    
T  45557468 tgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctacagattctagcttctagcaaaa 45557369  T
Q  229 tcaatt 234  Q
    ||||||    
T  45557368 tcaatt 45557363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 27571913 - 27571860
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| ||||||| ||| | ||| ||||||||||||||||||    
T  27571913 aaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaatt 27571860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 30182330 - 30182383
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||| ||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  30182330 aaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaatt 30182383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 40561742 - 40561775
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaac 174  Q
    ||||||||||||||||||||||||||||||||||    
T  40561742 tgtttggatacattcatgtaaaagtgagttgaac 40561775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 22195917 - 22195862
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| |||||| ||||| |||||||| |||||| ||||| ||||||||    
T  22195917 tgaaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaatcaatt 22195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 29842138 - 29842087
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||||||||||| || ||||||  ||| ||||||||||||||    
T  29842138 aatcaattctagaattaaaagccacgaatcctctctttaagtagaatcaatt 29842087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 26984533 - 26984567
Alignment:
Q  200 aaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| |||||||||||||||||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaatt 26984567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 40491677 - 40491576
Alignment:
Q  143 tttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaa 232  Q
    |||||||||||||||||||||||||||| |||| ||          | ||| ||||||||||||| |||||||||||| | || ||||||||||| ||||    
T  40491677 tttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaa 40491578  T
Q  233 tt 234  Q
    ||    
T  40491577 tt 40491576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 6895983 - 6896056
Alignment:
Q  180 gaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattatcctcgacaacaaccaaa 253  Q
    |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||    
T  6895983 gaaaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaattgtactcgacaacaaccaaa 6896056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 4911009 - 4910906
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    |||||||||||||| |||||||||||||| ||||| ||          ||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  4911009 tgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 4910910  T
Q  231 aatt 234  Q
    ||||    
T  4910909 aatt 4910906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 6654117 - 6654177
Alignment:
Q  174 ctgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  6654117 ctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaatt 6654177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 765422 - 765473
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  765422 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 765473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 16540210 - 16540105
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||||||| ||||||||||||||| |||| ||          ||||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  16540210 tgtgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttcaagtagaa 16540111  T
Q  229 tcaatt 234  Q
    ||||||    
T  16540110 tcaatt 16540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 5724664 - 5724717
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  5724664 aaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaatt 5724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 25195348 - 25195451
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||||||| |||||||||||||||||| ||||          |||||||||||| |||||| |||| ||||||||||  |||||||||||||    
T  25195348 tgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaa 25195445  T
Q  229 tcaatt 234  Q
    ||||||    
T  25195446 tcaatt 25195451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 31725828 - 31725758
Alignment:
Q  180 gaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattatcctcgacaacaacc 250  Q
    ||||||||||| |||||| ||||  || ||||||||| ||||||||||||||||| | |||||||||||||    
T  31725828 gaaaatcaattttagaatcaaaaattaaaaatcctaggttcaagtagaatcaattctactcgacaacaacc 31725758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 7952748 - 7952796
Alignment:
Q  186 caattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  7952748 caattctagaatcaaaagctacaaatcctcgcttcaagtagaataaatt 7952796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 3482149 - 3482044
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||| |||||||||||||||||| ||||||||| ||          ||||||||||||||| ||| ||| |||||||||| || ||||||||| ||    
T  3482149 tgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatcttaacttcaagtataa 3482050  T
Q  229 tcaatt 234  Q
    ||||||    
T  3482049 tcaatt 3482044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 1485180 - 1485233
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  1485180 aaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaatt 1485233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 30927094 - 30927041
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| ||| ||||||||| |||| |||||||||||| ||||||||    
T  30927094 aaaatcaattctataatcaaaagctacgaatcttagcttcaagtataatcaatt 30927041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 852583 - 852528
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||||| | || |||||| | |||||||||||| |||||||||||    
T  852583 aaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatcaattat 852528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 28053002 - 28052947
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| ||||||||| | |||||||| ||| ||||||||| ||||||||    
T  28053002 tgaaaatcaattttagaattaataactacaaattctatcttcaagtataatcaatt 28052947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 8856410 - 8856376
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||||||||||||||| |||||||||||||    
T  8856410 tgtgtttggatacattcatgtgaaagtgagttgaa 8856376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 25195897 - 25195848
Alignment:
Q  185 tcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| |||||||| ||||||||| || || |||||||||||    
T  25195897 tcaattctagaatcaaaagctataaatcctagttttaattagaatcaatt 25195848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 26280656 - 26280603
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| | |||| |||| |||||||| |||||||||||| |||||||||    
T  26280656 aaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaatt 26280603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 16540289 - 16540241
Alignment:
Q  69 tggtgtggagaattaaatttgttagaattgattttgtagaattgatttt 117  Q
    ||||| |||||||| | |||| ||||||||||| |||||||||||||||    
T  16540289 tggtggggagaattgattttgatagaattgattatgtagaattgatttt 16540241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 34620987 - 34620955
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||||||||||| ||||||||||||||||||    
T  34620987 tgtttggatacatttatgtaaaagtgagttgaa 34620955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 34748424 - 34748392
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||||||||||| ||||||||||||||||||    
T  34748424 tgtttggatacatttatgtaaaagtgagttgaa 34748392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 16552053 - 16551959
Alignment:
Q  144 ttggatacattcatgtaaaagtgagttgaactgta--------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    |||||||||||||||||||||||||||||||| ||        |||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtgaaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatc 16551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 32818350 - 32818457
Alignment:
Q  137 tatgtgtttggatacattcatgtaaaagtgagttgaactgta--------tg--aaaatcaattctagaattaaaagctacaaatcctagcttcaagtag 226  Q
    ||||||||||||||||||||||||||||| ||||||||| ||        ||  ||||||||||||||||| ||||||||||||| |||||||||| |||    
T  32818350 tatgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatag 32818449  T
Q  227 aatcaatt 234  Q
    ||||||||    
T  32818450 aatcaatt 32818457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 8604654 - 8604710
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatta 235  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  8604654 tgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatta 8604710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 55186994 - 55187049
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  55186994 tgaaaatcaattctataattaaaagttacaaatcctaacttcaagtagaatcaatt 55187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 9064284 - 9064227
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||    
T  9064284 tgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaattat 9064227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 50061660 - 50061715
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||    
T  50061660 tgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaatt 50061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 49138791 - 49138845
Alignment:
Q  175 tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 229  Q
    ||||| |||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  49138791 tgtataaaaatcaattttagaatcaaaagttacaaatcctagcttcaagtagaat 49138845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 1616439 - 1616371
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattatcctcgacaacaaccaa 252  Q
    ||||||||||||||| |||||||||||||  |||||| |||||||||||||| | ||||| |||||||||    
T  1616439 aatcaattctagaatcaaaagctacaaattgtagctt-aagtagaatcaattctactcgataacaaccaa 1616371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 9134663 - 9134608
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||| ||| |||||||||||||  ||||||||||||| |||||||    
T  9134663 tgaaaatcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaatt 9134608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 35065114 - 35065059
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||||| |||||  |||||| ||||||||||||| ||||||||||    
T  35065114 aaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattat 35065059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 21691194 - 21691299
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||| ||||||||||||||| |||||||| ||          ||||||||||||||| ||  |||||||||||||| ||| ||||||| |||    
T  21691194 tgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttgaa 21691293  T
Q  229 tcaatt 234  Q
    ||||||    
T  21691294 tcaatt 21691299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 53713543 - 53713648
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||| |||||||||||||||||||||||||| ||          || || |||||| |||||| |||||||||||||| |||||||||||| ||    
T  53713543 tgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagcttcaagtaaaa 53713642  T
Q  229 tcaatt 234  Q
    | ||||    
T  53713643 ttaatt 53713648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 14596740 - 14596687
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| |||| || |||| | |||||||||||||||||||||    
T  14596740 aaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaatt 14596687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 30357563 - 30357510
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| || ||| ||||||||||||||  ||||||||||||||||||||    
T  30357563 aaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaatt 30357510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 31012773 - 31012826
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| |||||||| ||||||||||||| ||  |||||||||||||    
T  31012773 aaaatcaattctaaaattaaaaactacaaatcctagttttgagtagaatcaatt 31012826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 29779106 - 29779141
Alignment:
Q  199 aaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29779106 aaaagctacaaattctagcttcaagtagaatcaatt 29779141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 41370044 - 41370095
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaa 232  Q
    |||||||| |||||||| |||| ||| |||||||| ||||||||||||||||    
T  41370044 aaaatcaagtctagaataaaaaactataaatcctaacttcaagtagaatcaa 41370095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 45011927 - 45011884
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaa 222  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  45011927 tgaaaatcaattctagaatcaaaagctacaaatcccagtttcaa 45011884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 1048766 - 1048716
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaat 233  Q
    |||||||| ||||||||||||||| |||| ||| ||| |||||||||||||    
T  1048766 aatcaattatagaattaaaagctataaattctaactttaagtagaatcaat 1048716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 26617519 - 26617469
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatca 231  Q
    |||||||||| || ||| |||||||||| || |||||||||||||||||||    
T  26617519 aaaatcaattttataatcaaaagctacagattctagcttcaagtagaatca 26617469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 32817486 - 32817540
Alignment:
Q  181 aaaatcaattctagaattaaaa-gctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  32817486 aaaatcaattgtagaagtaaaaagctacaaattctagcctcaagtagaatcaatt 32817540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 169
Target Start/End: Complemental strand, 35065166 - 35065136
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagt 169  Q
    |||||||||||||||||||||||||||||||    
T  35065166 tgtgtttggatacattcatgtaaaagtgagt 35065136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 37439196 - 37439143
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| ||||||||||||||| || | ||||||||||||| ||| ||||    
T  37439196 aaaatcaattatagaattaaaagctataatttctagcttcaagtataataaatt 37439143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 43571529 - 43571476
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||| |||||||||||||| || ||||  |||||||||||| ||||||||    
T  43571529 aaaatcaactctagaattaaaagttaaaaattatagcttcaagtataatcaatt 43571476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 55927754 - 55927787
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaac 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  55927754 tgtttggatacattcatgtaaaagtgacttgaac 55927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 1616493 - 1616457
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact 175  Q
    |||||||| |||||||||||||||| |||||||||||    
T  1616493 tgtgtttgaatacattcatgtaaaaatgagttgaact 1616457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 1616563 - 1616523
Alignment:
Q  77 agaattaaatttgttagaattgattttgtagaattgatttt 117  Q
    |||||| | |||| |||||||||||||||||||||||||||    
T  1616563 agaattgattttgatagaattgattttgtagaattgatttt 1616523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 5025616 - 5025588
Alignment:
Q  93 gaattgattttgtagaattgattttagtt 121  Q
    |||||||||||||||||||||||||||||    
T  5025616 gaattgattttgtagaattgattttagtt 5025588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 11271589 - 11271625
Alignment:
Q  199 aaaagctacaaatcctagcttcaag-tagaatcaatt 234  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11271589 aaaagctacaaatcctagcttcaagttagaatcaatt 11271625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 16644029 - 16643981
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 229  Q
    ||||||||||||||||| |||| ||| ||||  ||||||||||||||||    
T  16644029 aaaatcaattctagaatcaaaatctataaattatagcttcaagtagaat 16643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 45694717 - 45694681
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact 175  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  45694717 tgtgtttggatacattcatgtaaaaatgagttcaact 45694681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 52342059 - 52342023
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact 175  Q
    |||||||| |||||||||||||||| |||||||||||    
T  52342059 tgtgtttgaatacattcatgtaaaaatgagttgaact 52342023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 32927995 - 32927892
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    ||||||||||||||||||||||||||||||||||||| ||          | ||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  32927995 tgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaa 32927896  T
Q  229 tcaa 232  Q
    ||||    
T  32927895 tcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 4662937 - 4662990
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  4662937 aaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaataaatt 4662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 15677850 - 15677903
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  15677850 aaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaatt 15677903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 35495093 - 35494990
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||| |||||||||||||| ||||||||| ||          | |||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  35495093 tgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaa 35494994  T
Q  229 tcaa 232  Q
    ||||    
T  35494993 tcaa 35494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 13384686 - 13384741
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||||| |||||||||||||  ||||||||| |||||||||||    
T  13384686 tgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 32994270 - 32994329
Alignment:
Q  175 tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||| ||||||||||||||| | |||||||| ||||| |||||||||||||||||||||    
T  32994270 tgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaatt 32994329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 38868551 - 38868496
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||||||||    
T  38868551 tgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 44141082 - 44141137
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||    
T  44141082 tgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaatt 44141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 26100128 - 26100233
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaac----------tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    ||||||||||| |||| |||||||||||||||||||          ||| | |||||||||| |||||| |||||||||||||||||||||||| |||||    
T  26100128 tgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 26100227  T
Q  229 tcaatt 234  Q
     |||||    
T  26100228 ccaatt 26100233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 37684508 - 37684403
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||||||| |||||||||||||||||| | ||          | |||||||||| |||||| |||||| |||||||||| ||||||||||||    
T  37684508 tgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaa 37684409  T
Q  229 tcaatt 234  Q
    ||||||    
T  37684408 tcaatt 37684403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 38335895 - 38335967
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattatcctcgacaacaaccaaa 253  Q
    ||||||||||||| ||| |||||| ||||||| ||||||||| | ||||||||||| ||||| ||||| ||||    
T  38335895 aaaatcaattctaaaatcaaaagcaacaaatcttagcttcaactggaatcaattatactcgaaaacaaacaaa 38335967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 7244633 - 7244688
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||||| |||| ||||| ||| ||| |||||||||||||||||    
T  7244633 tgaaaatcaattctagaatcaaaaactacatatcttagtttcaagtagaatcaatt 7244688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 10368046 - 10367993
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||| ||||||||||| ||||||| ||||||||||| |||||||||| |||||    
T  10368046 aaaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaatt 10367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 16972046 - 16972149
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaac----------tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||| |||||||||||||||||||| ||||||          ||| | ||||||||||||| |||||||| |||||||| |||||||||| || ||    
T  16972046 tgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaa 16972145  T
Q  229 tcaa 232  Q
    ||||    
T  16972146 tcaa 16972149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 18355882 - 18355970
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattatcctcgacaacaacca-aaatggcaaaatcaatt 268  Q
    |||||||||| |||||| |||||  |||||||||||||||||  |||||||||| | ||||| ||||| || | ||| |||||||||||    
T  18355882 aaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaattctactcgaaaacaatcatacatgtcaaaatcaatt 18355970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 6027079 - 6027138
Alignment:
Q  177 tatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||||||||| |||||||||| |   || || |||||||||||||||||    
T  6027079 tatgaaaatcaattctagaatcaaaagctacatactttaactacaagtagaatcaattat 6027138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 10378232 - 10378283
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaa 232  Q
    ||||||||||||| |||||||| ||||||||| ||| || ||||||||||||    
T  10378232 aaaatcaattctaaaattaaaacctacaaatcatagttttaagtagaatcaa 10378283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 11572488 - 11572547
Alignment:
Q  177 tatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    |||||||||||||| || ||| |||| ||||||||  |||||||||||| ||||||||||    
T  11572488 tatgaaaatcaattttataatcaaaatctacaaattttagcttcaagtataatcaattat 11572547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 36200164 - 36200219
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||||| |||| | ||||||| || |||||||| |||||||||    
T  36200164 tgaaaatcaattctagaatcaaaatcgacaaatcataacttcaagttgaatcaatt 36200219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 7644596 - 7644562
Alignment:
Q  200 aaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||||||||| ||||||||||||||    
T  7644596 aaagctacaaatcctagctttaagtagaatcaatt 7644562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 9461520 - 9461554
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||||||||||||| |||||||||||||||    
T  9461520 tgtgtttggatacattcatataaaagtgagttgaa 9461554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 41891804 - 41891846
Alignment:
Q  79 aattaaatttgttagaattgattttgtagaattgattttagtt 121  Q
    |||||| |||| | |||||||||||||||||||||||||||||    
T  41891804 aattaattttgattgaattgattttgtagaattgattttagtt 41891846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 43492221 - 43492255
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaact 175  Q
    ||||||||||||||||||||||||| |||||||||    
T  43492221 tgtttggatacattcatgtaaaagtaagttgaact 43492255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 30098961 - 30098908
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||| |||||||||||  |||||||||||| |||||||||| || ||||||||    
T  30098961 aaaattaattctagaatcgaaagctacaaattctagcttcaaataaaatcaatt 30098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 390
Target Start/End: Original strand, 11784697 - 11784725
Alignment:
Q  362 atagcttatgaaaataacttataacatat 390  Q
    |||||||||||||||||||||||||||||    
T  11784697 atagcttatgaaaataacttataacatat 11784725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 32101176 - 32101140
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact 175  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  32101176 tgtgtgtggatacatttatgtaaaagtgagttgaact 32101140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 9818785 - 9818730
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  9818785 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 9818730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 18851114 - 18851171
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  18851114 tgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattat 18851171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 38845496 - 38845441
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  38845496 tgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 6951340 - 6951394
Alignment:
Q  182 aaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  6951340 aaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaattat 6951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 42858211 - 42858106
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||| ||| |||||||||||||||||||||||| ||          |||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  42858211 tgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaa 42858112  T
Q  229 tcaatt 234  Q
    ||||||    
T  42858111 tcaatt 42858106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 14299383 - 14299328
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  14299383 tgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 39097299 - 39097244
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| || ||||||||| |||||||  |||||||||||||||||||||    
T  39097299 tgaaaatcaattatataattaaaagttacaaattttagcttcaagtagaatcaatt 39097244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 8121633 - 8121547
Alignment:
Q  143 tttggatacattcatgtaaaagtgagttgaactgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 229  Q
    ||||||||||||||||||||||||| |||||| |    |||||||| |||||||| | ||||||||| | ||| ||| |||||||||    
T  8121633 tttggatacattcatgtaaaagtgaattgaacaggtgaaaaatcaactctagaatcagaagctacaatttctaactttaagtagaat 8121547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 18637335 - 18637282
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| |||||||||  ||| ||||||||||| |||||||||    
T  18637335 aaaatcaattctagaatcaaaagctacttatcttagcttcaagtggaatcaatt 18637282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 11648135 - 11648080
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| || ||| ||||  |||||||| |||||||||||||||||||||    
T  11648135 tgaaaatcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaatt 11648080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 34250383 - 34250438
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||| ||||| |||||| ||||||||||| | ||||| ||||||||||||||||    
T  34250383 tgaaaaacaattgtagaatcaaaagctacaatttctagcatcaagtagaatcaatt 34250438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 11577603 - 11577637
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||||| |||||||||||||||||||||||    
T  11577603 tgtgtttggatgcattcatgtaaaagtgagttgaa 11577637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 22226276 - 22226322
Alignment:
Q  187 aattctagaattaaaagctacaaatcctagcttcaagtagaatcaat 233  Q
    ||||||| ||| ||||||||||||| ||| |||||||||||||||||    
T  22226276 aattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 22572442 - 22572491
Alignment:
Q  185 tcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||| ||| ||||||||||||||| ||||||||| | ||||||||    
T  22572442 tcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaatt 22572491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 36639988 - 36639939
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatc 230  Q
    |||| |||||||||||||| ||||||||| | | ||||||||||||||||    
T  36639988 aaaaacaattctagaattagaagctacaatttccagcttcaagtagaatc 36639939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 2090190 - 2090222
Alignment:
Q  19 gtccctccagaagtgaaaccaaacatacattaa 51  Q
    ||||||||||||||||||||||||| |||||||    
T  2090190 gtccctccagaagtgaaaccaaacaaacattaa 2090222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 31906307 - 31906255
Alignment:
Q  184 atcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||| || ||| ||||| |||||||| |||||||||||| ||||||||||    
T  31906307 atcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaattat 31906255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 42741028 - 42740973
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  42741028 aaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaattat 42740973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 43501174 - 43501123
Alignment:
Q  183 aatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  43501174 aatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaatt 43501123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 2002729 - 2002779
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatca 231  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  2002729 aaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatca 2002779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 33019138 - 33019243
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaac----------tgtatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    ||||||||||| ||||||||||||||||||||||||          ||| ||||||||||||||| ||  ||||||||||||| |||||||||| || ||    
T  33019138 tgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataa 33019237  T
Q  229 tcaatt 234  Q
    ||||||    
T  33019238 tcaatt 33019243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 30503260 - 30503207
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||| |||| ||||||||| |||||| |||||||||||||||||||    
T  30503260 aaaatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaatcaatt 30503207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 16518881 - 16518845
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact 175  Q
    |||||||||||||||||||||||||||||||||||||    
T  16518881 tgtgtttggatacattcatgtaaaagtgagttgaact 16518845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 42982595 - 42982544
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaa 232  Q
    |||||||||||| |||| ||||||||||| | ||||||||||||||||||||    
T  42982595 aaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 12037116 - 12037059
Alignment:
Q  177 tatgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    |||||||||||||| |||||| |||||||||||||  ||| ||||| |||||||||||    
T  12037116 tatgaaaatcaattgtagaatcaaaagctacaaattttagtttcaactagaatcaatt 12037059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 13912890 - 13912770
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaactgta----------tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaa 228  Q
    |||||||||||||| |||||||||| |||||||||| |||          | ||||| ||||||||||| ||||  ||||||| ||||||||| ||||||    
T  13912890 tgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagcttcatgtagaa 13912791  T
Q  229 tcaattatcctcgacaacaac 249  Q
    | |||| | ||||||||||||    
T  13912790 taaattctactcgacaacaac 13912770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 12850778 - 12850727
Alignment:
Q  66 gtgtggtgtggagaattaaatttgttagaattgattttgtagaattgatttt 117  Q
    ||||||||||||||||| | |||  ||||||||||| |||||||||||||||    
T  12850778 gtgtggtgtggagaattgattttaatagaattgattatgtagaattgatttt 12850727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 21234577 - 21234612
Alignment:
Q  199 aaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21234577 aaaagctacaaattctagcttcaagtagaatcaatt 21234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 680272 - 680306
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaa 173  Q
    |||||||| ||||||||||||||||||||||||||    
T  680272 tgtgtttgcatacattcatgtaaaagtgagttgaa 680306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 22536200 - 22536146
Alignment:
Q  52 gcgtatgtttggcagtgtggtgtggagaattaaatttgttagaattgattttgta 106  Q
    ||||||||||||  ||||||||||||||||| | |||| ||||||||||| ||||    
T  22536200 gcgtatgtttgggtgtgtggtgtggagaattgattttgatagaattgattatgta 22536146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 1976848 - 1976877
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagtt 170  Q
    ||||||||||||||||||||||||||||||    
T  1976848 tgtttggatacattcatgtaaaagtgagtt 1976877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 3352129 - 3352072
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    |||||||||||| |||||| ||||||| ||| ||| | ||||||||| ||||||||||    
T  3352129 tgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaattat 3352072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 15220845 - 15220878
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaac 174  Q
    ||||||||||||||||||| ||||||||||||||    
T  15220845 tgtttggatacattcatgttaaagtgagttgaac 15220878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 31453436 - 31453379
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattat 236  Q
    ||||||||||||  ||||| |||||  ||||||  |||||||||||||||||||||||    
T  31453436 tgaaaatcaatttcagaatcaaaaggaacaaattttagcttcaagtagaatcaattat 31453379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 40401627 - 40401660
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaac 174  Q
    ||||||||||||||||||||||||| ||||||||    
T  40401627 tgtttggatacattcatgtaaaagtcagttgaac 40401660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 43717355 - 43717322
Alignment:
Q  201 aagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||| ||||||||||||||||||||||    
T  43717355 aagctacaaattctagcttcaagtagaatcaatt 43717322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 8800682 - 8800714
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||||| |||||||||||||||||||||    
T  8800682 tgtttggatacgttcatgtaaaagtgagttgaa 8800714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 9143092 - 9143044
Alignment:
Q  125 gactaaaaagggtatgtgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||| ||| | |||||| ||||||||||||||| ||||||||||    
T  9143092 gactaaaaatggtttttgtttgaatacattcatgtaaatgtgagttgaa 9143044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 11504044 - 11504080
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttgaact 175  Q
    |||||||  ||||||||||||||||||||||||||||    
T  11504044 tgtgttttaatacattcatgtaaaagtgagttgaact 11504080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 42982643 - 42982615
Alignment:
Q  143 tttggatacattcatgtaaaagtgagttg 171  Q
    |||||||||||||||||||||||||||||    
T  42982643 tttggatacattcatgtaaaagtgagttg 42982615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 31879 - 31824
Alignment:
Q  179 tgaaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||    
T  31879 tgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagtataatcaatt 31824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 31932 - 31900
Alignment:
Q  139 tgtgtttggatacattcatgtaaaagtgagttg 171  Q
    |||||||||||||||| ||||||||||||||||    
T  31932 tgtgtttggatacatttatgtaaaagtgagttg 31900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 220638 - 220691
Alignment:
Q  181 aaaatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 234  Q
    ||||||||||||||||| |||| || |||| | |||||||||||||||||||||    
T  220638 aaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaatt 220691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 14098 - 14130
Alignment:
Q  141 tgtttggatacattcatgtaaaagtgagttgaa 173  Q
    ||||||||||||||||||| |||||||||||||    
T  14098 tgtttggatacattcatgtgaaagtgagttgaa 14130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University