View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_low_2 (Length: 774)
Name: NF12595_low_2
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 66 - 502
Target Start/End: Original strand, 7089340 - 7089776
Alignment:
| Q |
66 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaactttac |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7089340 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaagtttac |
7089439 |
T |
|
| Q |
166 |
tctggaaaacagaaagatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattcaatttttaacaactacatacttcatttgattcaaatagaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7089440 |
tctggaaaacagaaagatgaaaaagaatactacaaaaaaaagcctaaaagaaggtaattcaagttttaacaactacatacttcatttgattcaaagagaa |
7089539 |
T |
|
| Q |
266 |
gtcttagtattatattacaaaaattccaacaaaagtttgttaccaaatagagagtaatttcatgtgagcactacaatcttaccagggcttagaccaagat |
365 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089540 |
gtcttagtattattttaaaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaatcttaccagggcttagaccaagat |
7089639 |
T |
|
| Q |
366 |
ataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaatt |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089640 |
ataaactatatgtagaagtagccctttccctcttaataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaatt |
7089739 |
T |
|
| Q |
466 |
acacatttagtaccttacaccatgtgcttccaagctt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089740 |
acacatttagtaccttacaccatgtgcttccaagctt |
7089776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 558 - 764
Target Start/End: Original strand, 7089827 - 7090033
Alignment:
| Q |
558 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089827 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
7089926 |
T |
|
| Q |
658 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
757 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089927 |
acaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
7090026 |
T |
|
| Q |
758 |
ctctgtg |
764 |
Q |
| |
|
||||||| |
|
|
| T |
7090027 |
ctctgtg |
7090033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 558 - 762
Target Start/End: Original strand, 7669653 - 7669857
Alignment:
| Q |
558 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
657 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
|
| Q |
658 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
757 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
7669753 |
acaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattga |
7669852 |
T |
|
| Q |
758 |
ctctg |
762 |
Q |
| |
|
||||| |
|
|
| T |
7669853 |
ctctg |
7669857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 242 - 502
Target Start/End: Original strand, 7669346 - 7669606
Alignment:
| Q |
242 |
atacttcatttgattcaaatagaagtcttagtattatattacaaaaattccaacaaaagtttgttaccaaatagagagtaatttcatgtgagcactacaa |
341 |
Q |
| |
|
|||||| |||||||||||| |||| ||| || | || ||| |||||| | ||||||| ||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
7669346 |
atacttaatttgattcaaagagaaaccttggtgtgattttagaaaaatccaaacaaaattttgttatcaaatagagaataatttcatgtgagcacaacaa |
7669445 |
T |
|
| Q |
342 |
tcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaa |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7669446 |
tcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaa |
7669545 |
T |
|
| Q |
442 |
aacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
502 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7669546 |
aacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagctt |
7669606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 7668703 - 7668888
Alignment:
| Q |
57 |
actaacttcatagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattg |
156 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||| |||||||||| || || | |||| |||| |||| || || | |||||| |||||||||| |
|
|
| T |
7668703 |
actaacttcatagatcgagaatagtttatagactatttattacatttccgtagttcaaagactaaataggagagaatgtgatagtttagcgattgaattg |
7668802 |
T |
|
| Q |
157 |
taactttactctggaaaacagaaagatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattcaatttttaacaactacat |
243 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
7668803 |
aaagttcactctggaaaacagaaggatgaaaaagaatactacaaaaaaaa-cctaaaagagggtatttcaagttttaacaactacat |
7668888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University